Difference between revisions of "4ppan"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/MECDPS MECDPS] == * direction: ** LEFT-TO-RIGHT * common name: ** 2-C-methyl-D-erythritol 2,4-cyclo...")
(Created page with "Category:Pathway == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240] == * common_name: ** Pyrimidine metabolism * Synonym(s): == Reaction(s) found ==...")
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Pathway]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/MECDPS MECDPS] ==
+
== Pathway [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240] ==
−
* direction:
+
* common_name:
−
** LEFT-TO-RIGHT
+
** Pyrimidine metabolism
−
* common name:
+
−
** 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reaction(s) found ==
−
* With identifiers:
+
'''82''' reactions found over '''244''' reactions in the full pathway
−
** 1.0 [[2p4c2me]][c] '''=>''' 1.0 [[cmp]][c] '''+''' 1.0 [[2mecdp]][c]
+
* [[ADNK1]]
−
* With common name(s):
+
** 2 associated gene(s):
−
** 1.0 2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol[c] '''=>''' 1.0 CMP C9H12N3O8P[c] '''+''' 1.0 2-C-methyl-D-erythritol 2,4-cyclodiphosphate[c]
+
*** [[EF0740]]
−
 
+
*** [[EF0228]]
−
== Genes associated with this reaction  ==
+
** 2 reconstruction source(s) associated:
−
Genes have been associated with this reaction based on different elements listed below.
+
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
* [[EF0042]]
+
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
+
* [[ADNUC]]
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
+
** 2 associated gene(s):
−
== Pathways  ==
+
*** [[EF2587]]
−
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
+
*** [[EF1921]]
−
** '''460''' reactions found over '''2349''' reactions in the full pathway
+
** 2 reconstruction source(s) associated:
−
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
+
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
** '''135''' reactions found over '''694''' reactions in the full pathway
+
*** [[orthology-l_plantarum_wcfs1]]
−
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
+
* [[ASPCT]]
−
** '''179''' reactions found over '''1054''' reactions in the full pathway
+
** 1 associated gene(s):
−
* [[map00900]]: [http://www.genome.jp/dbget-bin/www_bget?map00900 map00900]
+
*** [[EF1719]]
−
** '''14''' reactions found over '''67''' reactions in the full pathway
+
** 3 reconstruction source(s) associated:
−
== Reconstruction information  ==
+
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
* [[orthology]]:
+
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
−
** [[pantograph]]:
+
*** [[orthology-l_plantarum_wcfs1]]
−
*** [[e_coli_sstr_k12_substr_mg1655]]
+
* [[CBPS]]
−
*** [[b_subtilis_subsp_subtilis_str168]]
+
** 2 associated gene(s):
 +
*** [[EF1716]]
 +
*** [[EF1717]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[CMPDAi]]
 +
** 1 associated gene(s):
 +
*** [[EF2448]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
* [[CSND]]
 +
** 2 associated gene(s):
 +
*** [[EF0390]]
 +
*** [[EF2206]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[CTPS1]]
 +
** 1 associated gene(s):
 +
*** [[EF1147]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[CTPS2]]
 +
** 1 associated gene(s):
 +
*** [[EF1147]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[CYTD]]
 +
** 1 associated gene(s):
 +
*** [[EF0175]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
* [[CYTDH]]
 +
** 1 associated gene(s):
 +
*** [[EF1921]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
* [[CYTDK1]]
 +
** 1 associated gene(s):
 +
*** [[EF0825]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[CYTDK2]]
 +
** 1 associated gene(s):
 +
*** [[EF0825]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[CYTK1]]
 +
** 1 associated gene(s):
 +
*** [[EF1547]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[CYTK2]]
 +
** 1 associated gene(s):
 +
*** [[EF1547]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[DCMPDA]]
 +
** 1 associated gene(s):
 +
*** [[EF2448]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
* [[DCYTD]]
 +
** 1 associated gene(s):
 +
*** [[EF0175]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
* [[DHORD_NAD]]
 +
** 1 associated gene(s):
 +
*** [[EF1714]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[DHORTS]]
 +
** 1 associated gene(s):
 +
*** [[EF1718]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[DTMPK]]
 +
** 1 associated gene(s):
 +
*** [[EF2764]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[DURIK1]]
 +
** 1 associated gene(s):
 +
*** [[EF2555]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[DURIPP]]
 +
** 2 associated gene(s):
 +
*** [[EF0173]]
 +
*** [[EF0187]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[DUTPDP]]
 +
** 1 associated gene(s):
 +
*** [[EF0039]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[GLUN]]
 +
** 1 associated gene(s):
 +
*** [[EF1163]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[manual-2_reaction_to_add_delete]]
 +
* [[GNNUC]]
 +
** 2 associated gene(s):
 +
*** [[EF2587]]
 +
*** [[EF1921]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[INSH]]
 +
** 2 associated gene(s):
 +
*** [[EF1921]]
 +
*** [[EF2587]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[ITCY]]
 +
** 1 associated gene(s):
 +
*** [[EF0825]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[MCSNAH]]
 +
** 1 associated gene(s):
 +
*** [[EF2206]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
* [[MSAR]]
 +
** 1 associated gene(s):
 +
*** [[EF2956]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
* [[NADDP]]
 +
** 1 associated gene(s):
 +
*** [[EF0722]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
* [[NDPK1]]
 +
** 2 associated gene(s):
 +
*** [[EF0228]]
 +
*** [[EF1036]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[NDPK2]]
 +
** 2 associated gene(s):
 +
*** [[EF0228]]
 +
*** [[EF1036]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[NDPK3]]
 +
** 2 associated gene(s):
 +
*** [[EF0228]]
 +
*** [[EF1036]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[NDPK4]]
 +
** 2 associated gene(s):
 +
*** [[EF1036]]
 +
*** [[EF0228]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[NDPK5]]
 +
** 2 associated gene(s):
 +
*** [[EF1036]]
 +
*** [[EF0228]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[NDPK6]]
 +
** 2 associated gene(s):
 +
*** [[EF0228]]
 +
*** [[EF1036]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[NDPK7]]
 +
** 2 associated gene(s):
 +
*** [[EF1036]]
 +
*** [[EF0228]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[NDPK8]]
 +
** 2 associated gene(s):
 +
*** [[EF0228]]
 +
*** [[EF1036]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[NDPK9]]
 +
** 1 associated gene(s):
 +
*** [[EF1036]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[NTD1]]
 +
** 2 associated gene(s):
 +
*** [[EF0822]]
 +
*** [[EF0062]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
* [[NTD10]]
 +
** 1 associated gene(s):
 +
*** [[EF0062]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
* [[NTD2]]
 +
** 2 associated gene(s):
 +
*** [[EF0062]]
 +
*** [[EF0822]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
* [[NTD3]]
 +
** 1 associated gene(s):
 +
*** [[EF0062]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
* [[NTD4]]
 +
** 1 associated gene(s):
 +
*** [[EF0062]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
* [[NTD5]]
 +
** 2 associated gene(s):
 +
*** [[EF0822]]
 +
*** [[EF0062]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
* [[NTD6]]
 +
** 1 associated gene(s):
 +
*** [[EF0062]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
* [[NTD7]]
 +
** 1 associated gene(s):
 +
*** [[EF0062]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
* [[NTD8]]
 +
** 1 associated gene(s):
 +
*** [[EF0062]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
* [[NTD9]]
 +
** 1 associated gene(s):
 +
*** [[EF0062]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
* [[NTP10]]
 +
** 1 associated gene(s):
 +
*** [[EF3119]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
* [[NTP5]]
 +
** 1 associated gene(s):
 +
*** [[EF3119]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
* [[NTPP3]]
 +
** 1 associated gene(s):
 +
*** [[EF3218]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
* [[NTPP4]]
 +
** 1 associated gene(s):
 +
*** [[EF3218]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
* [[NTPP9]]
 +
** 1 associated gene(s):
 +
*** [[EF3266]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
* [[OMPDC]]
 +
** 1 associated gene(s):
 +
*** [[EF1713]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[ORPT]]
 +
** 1 associated gene(s):
 +
*** [[EF1712]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[PNP]]
 +
** 2 associated gene(s):
 +
*** [[EF0187]]
 +
*** [[EF0186]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
* [[PUNP1]]
 +
** 2 associated gene(s):
 +
*** [[EF0186]]
 +
*** [[EF0187]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[PUNP2]]
 +
** 2 associated gene(s):
 +
*** [[EF0187]]
 +
*** [[EF0186]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[PUNP4]]
 +
** 2 associated gene(s):
 +
*** [[EF0187]]
 +
*** [[EF0186]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[PUNP6]]
 +
** 2 associated gene(s):
 +
*** [[EF0186]]
 +
*** [[EF0187]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[PUNP7]]
 +
** 2 associated gene(s):
 +
*** [[EF0186]]
 +
*** [[EF0187]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[PYNP1]]
 +
** 1 associated gene(s):
 +
*** [[EF0173]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
* [[PYNP2r]]
 +
** 1 associated gene(s):
 +
*** [[EF0173]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
* [[RNDR1]]
 +
** 3 associated gene(s):
 +
*** [[EF0472]]
 +
*** [[EF0470]]
 +
*** [[EF0471]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[RNDR2]]
 +
** 3 associated gene(s):
 +
*** [[EF0472]]
 +
*** [[EF0470]]
 +
*** [[EF0471]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[RNDR3]]
 +
** 3 associated gene(s):
 +
*** [[EF0472]]
 +
*** [[EF0470]]
 +
*** [[EF0471]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[RNDR4]]
 +
** 3 associated gene(s):
 +
*** [[EF0470]]
 +
*** [[EF0472]]
 +
*** [[EF0471]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[RNTR1]]
 +
** 2 associated gene(s):
 +
*** [[EF2754]]
 +
*** [[EF1491]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[RNTR2]]
 +
** 2 associated gene(s):
 +
*** [[EF2754]]
 +
*** [[EF1491]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[RNTR3]]
 +
** 2 associated gene(s):
 +
*** [[EF1491]]
 +
*** [[EF2754]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[RNTR4]]
 +
** 2 associated gene(s):
 +
*** [[EF1491]]
 +
*** [[EF2754]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[TMDK1]]
 +
** 1 associated gene(s):
 +
*** [[EF2555]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[TMDPP]]
 +
** 1 associated gene(s):
 +
*** [[EF0173]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
* [[TMDS]]
 +
** 1 associated gene(s):
 +
*** [[EF1576]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[UMPK]]
 +
** 2 associated gene(s):
 +
*** [[EF2396]]
 +
*** [[EF1547]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[UPPRT]]
 +
** 1 associated gene(s):
 +
*** [[EF2549]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[URACPAH]]
 +
** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
 +
* [[URIDK2r]]
 +
** 1 associated gene(s):
 +
*** [[EF2396]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[URIH]]
 +
** 1 associated gene(s):
 +
*** [[EF1921]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
* [[URIK1]]
 +
** 1 associated gene(s):
 +
*** [[EF0825]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[URIK2]]
 +
** 1 associated gene(s):
 +
*** [[EF0825]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[URIK3]]
 +
** 1 associated gene(s):
 +
*** [[EF0825]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
== Reaction(s) not found ==
 +
* [http://bigg.ucsd.edu/universal/reactions/23PDE2pp 23PDE2pp]
 +
* [http://bigg.ucsd.edu/universal/reactions/23PDE4pp 23PDE4pp]
 +
* [http://bigg.ucsd.edu/universal/reactions/23PDE7pp 23PDE7pp]
 +
* [http://bigg.ucsd.edu/universal/reactions/23PDE9pp 23PDE9pp]
 +
* [http://bigg.ucsd.edu/universal/reactions/3NTD2pp 3NTD2pp]
 +
* [http://bigg.ucsd.edu/universal/reactions/3NTD4pp 3NTD4pp]
 +
* [http://bigg.ucsd.edu/universal/reactions/3NTD7l 3NTD7l]
 +
* [http://bigg.ucsd.edu/universal/reactions/3NTD7pp 3NTD7pp]
 +
* [http://bigg.ucsd.edu/universal/reactions/3NTD9pp 3NTD9pp]
 +
* [http://bigg.ucsd.edu/universal/reactions/56DH5FLURAAMH 56DH5FLURAAMH]
 +
* [http://bigg.ucsd.edu/universal/reactions/5FLURAOR 5FLURAOR]
 +
* [http://bigg.ucsd.edu/universal/reactions/5FLURAPRT 5FLURAPRT]
 +
* [http://bigg.ucsd.edu/universal/reactions/ADNK1m ADNK1m]
 +
* [http://bigg.ucsd.edu/universal/reactions/AFLBURPPAAMH AFLBURPPAAMH]
 +
* [http://bigg.ucsd.edu/universal/reactions/ASPCT_1 ASPCT_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/ASPCTm ASPCTm]
 +
* [http://bigg.ucsd.edu/universal/reactions/ASPCTn ASPCTn]
 +
* [http://bigg.ucsd.edu/universal/reactions/ATDGDm ATDGDm]
 +
* [http://bigg.ucsd.edu/universal/reactions/ATGDm ATGDm]
 +
* [http://bigg.ucsd.edu/universal/reactions/ATP1ter ATP1ter]
 +
* [http://bigg.ucsd.edu/universal/reactions/ATPH1 ATPH1]
 +
* [http://bigg.ucsd.edu/universal/reactions/ATPH1e ATPH1e]
 +
* [http://bigg.ucsd.edu/universal/reactions/ATPH2e ATPH2e]
 +
* [http://bigg.ucsd.edu/universal/reactions/ATPtm ATPtm]
 +
* [http://bigg.ucsd.edu/universal/reactions/BUPN BUPN]
 +
* [http://bigg.ucsd.edu/universal/reactions/CBPSam CBPSam]
 +
* [http://bigg.ucsd.edu/universal/reactions/CBPSn CBPSn]
 +
* [http://bigg.ucsd.edu/universal/reactions/CDPPH CDPPH]
 +
* [http://bigg.ucsd.edu/universal/reactions/CMPN CMPN]
 +
* [http://bigg.ucsd.edu/universal/reactions/CYTDK2m CYTDK2m]
 +
* [http://bigg.ucsd.edu/universal/reactions/CYTDn CYTDn]
 +
* [http://bigg.ucsd.edu/universal/reactions/CYTK1m CYTK1m]
 +
* [http://bigg.ucsd.edu/universal/reactions/CYTK1n CYTK1n]
 +
* [http://bigg.ucsd.edu/universal/reactions/CYTK2n CYTK2n]
 +
* [http://bigg.ucsd.edu/universal/reactions/DATCY DATCY]
 +
* [http://bigg.ucsd.edu/universal/reactions/DATUP DATUP]
 +
* [http://bigg.ucsd.edu/universal/reactions/DCK1m DCK1m]
 +
* [http://bigg.ucsd.edu/universal/reactions/DCK1n DCK1n]
 +
* [http://bigg.ucsd.edu/universal/reactions/DCK2n DCK2n]
 +
* [http://bigg.ucsd.edu/universal/reactions/DCTCP DCTCP]
 +
* [http://bigg.ucsd.edu/universal/reactions/DCTPD DCTPD]
 +
* [http://bigg.ucsd.edu/universal/reactions/DCTPD2 DCTPD2]
 +
* [http://bigg.ucsd.edu/universal/reactions/DCTUP DCTUP]
 +
* [http://bigg.ucsd.edu/universal/reactions/DCYTDn DCYTDn]
 +
* [http://bigg.ucsd.edu/universal/reactions/DGNSKm DGNSKm]
 +
* [http://bigg.ucsd.edu/universal/reactions/DGTCY DGTCY]
 +
* [http://bigg.ucsd.edu/universal/reactions/DGTUP DGTUP]
 +
* [http://bigg.ucsd.edu/universal/reactions/DHORDfum DHORDfum]
 +
* [http://bigg.ucsd.edu/universal/reactions/DHORTSn DHORTSn]
 +
* [http://bigg.ucsd.edu/universal/reactions/DHPD DHPD]
 +
* [http://bigg.ucsd.edu/universal/reactions/DHPM1 DHPM1]
 +
* [http://bigg.ucsd.edu/universal/reactions/DHPM2 DHPM2]
 +
* [http://bigg.ucsd.edu/universal/reactions/DHR DHR]
 +
* [http://bigg.ucsd.edu/universal/reactions/DNADDP DNADDP]
 +
* [http://bigg.ucsd.edu/universal/reactions/DPCOAPP DPCOAPP]
 +
* [http://bigg.ucsd.edu/universal/reactions/DTPH DTPH]
 +
* [http://bigg.ucsd.edu/universal/reactions/DTTGY DTTGY]
 +
* [http://bigg.ucsd.edu/universal/reactions/DTTUP DTTUP]
 +
* [http://bigg.ucsd.edu/universal/reactions/DURAD DURAD]
 +
* [http://bigg.ucsd.edu/universal/reactions/DURAD2 DURAD2]
 +
* [http://bigg.ucsd.edu/universal/reactions/DURADx DURADx]
 +
* [http://bigg.ucsd.edu/universal/reactions/DURIK1m DURIK1m]
 +
* [http://bigg.ucsd.edu/universal/reactions/DUTCP DUTCP]
 +
* [http://bigg.ucsd.edu/universal/reactions/DUTPDPm DUTPDPm]
 +
* [http://bigg.ucsd.edu/universal/reactions/DUTPDPn DUTPDPn]
 +
* [http://bigg.ucsd.edu/universal/reactions/DUTUP DUTUP]
 +
* [http://bigg.ucsd.edu/universal/reactions/FADDP FADDP]
 +
* [http://bigg.ucsd.edu/universal/reactions/GAM GAM]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLUNm GLUNm]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLUNpp GLUNpp]
 +
* [http://bigg.ucsd.edu/universal/reactions/GMP5N GMP5N]
 +
* [http://bigg.ucsd.edu/universal/reactions/GTPH1 GTPH1]
 +
* [http://bigg.ucsd.edu/universal/reactions/HCGALm HCGALm]
 +
* [http://bigg.ucsd.edu/universal/reactions/NADDPe NADDPe]
 +
* [http://bigg.ucsd.edu/universal/reactions/NADDPp NADDPp]
 +
* [http://bigg.ucsd.edu/universal/reactions/NDP1 NDP1]
 +
* [http://bigg.ucsd.edu/universal/reactions/NDP3 NDP3]
 +
* [http://bigg.ucsd.edu/universal/reactions/NDP3ex NDP3ex]
 +
* [http://bigg.ucsd.edu/universal/reactions/NDP3g NDP3g]
 +
* [http://bigg.ucsd.edu/universal/reactions/NDP6 NDP6]
 +
* [http://bigg.ucsd.edu/universal/reactions/NDP7 NDP7]
 +
* [http://bigg.ucsd.edu/universal/reactions/NDP7er NDP7er]
 +
* [http://bigg.ucsd.edu/universal/reactions/NDP7ex NDP7ex]
 +
* [http://bigg.ucsd.edu/universal/reactions/NDP7g NDP7g]
 +
* [http://bigg.ucsd.edu/universal/reactions/NDP8ex NDP8ex]
 +
* [http://bigg.ucsd.edu/universal/reactions/NDPK10 NDPK10]
 +
* [http://bigg.ucsd.edu/universal/reactions/NDPK10m NDPK10m]
 +
* [http://bigg.ucsd.edu/universal/reactions/NDPK10n NDPK10n]
 +
* [http://bigg.ucsd.edu/universal/reactions/NDPK1m NDPK1m]
 +
* [http://bigg.ucsd.edu/universal/reactions/NDPK1n NDPK1n]
 +
* [http://bigg.ucsd.edu/universal/reactions/NDPK2m NDPK2m]
 +
* [http://bigg.ucsd.edu/universal/reactions/NDPK2n NDPK2n]
 +
* [http://bigg.ucsd.edu/universal/reactions/NDPK3m NDPK3m]
 +
* [http://bigg.ucsd.edu/universal/reactions/NDPK3n NDPK3n]
 +
* [http://bigg.ucsd.edu/universal/reactions/NDPK4m NDPK4m]
 +
* [http://bigg.ucsd.edu/universal/reactions/NDPK4n NDPK4n]
 +
* [http://bigg.ucsd.edu/universal/reactions/NDPK5m NDPK5m]
 +
* [http://bigg.ucsd.edu/universal/reactions/NDPK5n NDPK5n]
 +
* [http://bigg.ucsd.edu/universal/reactions/NDPK6m NDPK6m]
 +
* [http://bigg.ucsd.edu/universal/reactions/NDPK6n NDPK6n]
 +
* [http://bigg.ucsd.edu/universal/reactions/NDPK7m NDPK7m]
 +
* [http://bigg.ucsd.edu/universal/reactions/NDPK7n NDPK7n]
 +
* [http://bigg.ucsd.edu/universal/reactions/NDPK8m NDPK8m]
 +
* [http://bigg.ucsd.edu/universal/reactions/NDPK8n NDPK8n]
 +
* [http://bigg.ucsd.edu/universal/reactions/NDPK9m NDPK9m]
 +
* [http://bigg.ucsd.edu/universal/reactions/NDPK9n NDPK9n]
 +
* [http://bigg.ucsd.edu/universal/reactions/NMNHYD NMNHYD]
 +
* [http://bigg.ucsd.edu/universal/reactions/NMNR NMNR]
 +
* [http://bigg.ucsd.edu/universal/reactions/NP1 NP1]
 +
* [http://bigg.ucsd.edu/universal/reactions/NPH NPH]
 +
* [http://bigg.ucsd.edu/universal/reactions/NT5C NT5C]
 +
* [http://bigg.ucsd.edu/universal/reactions/NTD10pp NTD10pp]
 +
* [http://bigg.ucsd.edu/universal/reactions/NTD11 NTD11]
 +
* [http://bigg.ucsd.edu/universal/reactions/NTD11pp NTD11pp]
 +
* [http://bigg.ucsd.edu/universal/reactions/NTD1m NTD1m]
 +
* [http://bigg.ucsd.edu/universal/reactions/NTD1pp NTD1pp]
 +
* [http://bigg.ucsd.edu/universal/reactions/NTD2e NTD2e]
 +
* [http://bigg.ucsd.edu/universal/reactions/NTD2l NTD2l]
 +
* [http://bigg.ucsd.edu/universal/reactions/NTD2m NTD2m]
 +
* [http://bigg.ucsd.edu/universal/reactions/NTD2pp NTD2pp]
 +
* [http://bigg.ucsd.edu/universal/reactions/NTD3l NTD3l]
 +
* [http://bigg.ucsd.edu/universal/reactions/NTD3pp NTD3pp]
 +
* [http://bigg.ucsd.edu/universal/reactions/NTD4e NTD4e]
 +
* [http://bigg.ucsd.edu/universal/reactions/NTD4l NTD4l]
 +
* [http://bigg.ucsd.edu/universal/reactions/NTD4pp NTD4pp]
 +
* [http://bigg.ucsd.edu/universal/reactions/NTD5l NTD5l]
 +
* [http://bigg.ucsd.edu/universal/reactions/NTD5m NTD5m]
 +
* [http://bigg.ucsd.edu/universal/reactions/NTD5pp NTD5pp]
 +
* [http://bigg.ucsd.edu/universal/reactions/NTD6l NTD6l]
 +
* [http://bigg.ucsd.edu/universal/reactions/NTD6pp NTD6pp]
 +
* [http://bigg.ucsd.edu/universal/reactions/NTD7e NTD7e]
 +
* [http://bigg.ucsd.edu/universal/reactions/NTD7l NTD7l]
 +
* [http://bigg.ucsd.edu/universal/reactions/NTD7pp NTD7pp]
 +
* [http://bigg.ucsd.edu/universal/reactions/NTD8l NTD8l]
 +
* [http://bigg.ucsd.edu/universal/reactions/NTD8pp NTD8pp]
 +
* [http://bigg.ucsd.edu/universal/reactions/NTD9e NTD9e]
 +
* [http://bigg.ucsd.edu/universal/reactions/NTD9l NTD9l]
 +
* [http://bigg.ucsd.edu/universal/reactions/NTD9pp NTD9pp]
 +
* [http://bigg.ucsd.edu/universal/reactions/NTP7 NTP7]
 +
* [http://bigg.ucsd.edu/universal/reactions/NTP8 NTP8]
 +
* [http://bigg.ucsd.edu/universal/reactions/NTP9 NTP9]
 +
* [http://bigg.ucsd.edu/universal/reactions/NTPP2 NTPP2]
 +
* [http://bigg.ucsd.edu/universal/reactions/NTPP6 NTPP6]
 +
* [http://bigg.ucsd.edu/universal/reactions/NTPP8 NTPP8]
 +
* [http://bigg.ucsd.edu/universal/reactions/PUNP1m PUNP1m]
 +
* [http://bigg.ucsd.edu/universal/reactions/RNDR1n RNDR1n]
 +
* [http://bigg.ucsd.edu/universal/reactions/RNDR2n RNDR2n]
 +
* [http://bigg.ucsd.edu/universal/reactions/RNDR3n RNDR3n]
 +
* [http://bigg.ucsd.edu/universal/reactions/RNDR4n RNDR4n]
 +
* [http://bigg.ucsd.edu/universal/reactions/TMDK1m TMDK1m]
 +
* [http://bigg.ucsd.edu/universal/reactions/TMDS3 TMDS3]
 +
* [http://bigg.ucsd.edu/universal/reactions/TMDSf TMDSf]
 +
* [http://bigg.ucsd.edu/universal/reactions/UDPGP UDPGP]
 +
* [http://bigg.ucsd.edu/universal/reactions/UDPGPpp UDPGPpp]
 +
* [http://bigg.ucsd.edu/universal/reactions/UMPKm UMPKm]
 +
* [http://bigg.ucsd.edu/universal/reactions/UMPKn UMPKn]
 +
* [http://bigg.ucsd.edu/universal/reactions/UPPN UPPN]
 +
* [http://bigg.ucsd.edu/universal/reactions/URIDK2m URIDK2m]
 +
* [http://bigg.ucsd.edu/universal/reactions/URIDK2rn URIDK2rn]
 +
* [http://bigg.ucsd.edu/universal/reactions/UTCY UTCY]
 +
* [http://bigg.ucsd.edu/universal/reactions/UTPH1 UTPH1]
 +
* [http://bigg.ucsd.edu/universal/reactions/UTUP UTUP]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: common_name=Pyrimidine metabolism}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23864 23864]
+
{{#set: reaction found=82}}
−
* BioCyc : META:RXN0-302
+
{{#set: total reaction=244}}
−
* MetaNetX (MNX) Equation : MNXR101424
+
{{#set: completion rate=34.0}}
−
* KEGG Reaction : R05637
+
−
* EC Number : 4.6.1.12
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase}}
+
−
{{#set: gene associated=EF0042}}
+
−
{{#set: in pathway=map01100|map01130|map01110|map00900}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655|b_subtilis_subsp_subtilis_str168}}
+

Revision as of 19:27, 18 March 2018

Pathway map00240

  • common_name:
    • Pyrimidine metabolism
  • Synonym(s):

Reaction(s) found

82 reactions found over 244 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/efaecV583/index.php?title=4ppan&oldid=7271"