Difference between revisions of "6pgg"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/SELNPS SELNPS] == * direction: ** LEFT-TO-RIGHT * common name: ** Selenophosphate synthase * Synony...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/ME2 ME2] == * direction: ** LEFT-TO-RIGHT * common name: ** Malic enzyme (NADP) * Synonym(s): == R...")
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/SELNPS SELNPS] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/ME2 ME2] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Selenophosphate synthase
+
** Malic enzyme (NADP)
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[atp]][c] '''+''' 1.0 [[seln]][c] '''+''' 1.0 [[h2o]][c] '''=>''' 1.0 [[selnp]][c] '''+''' 1.0 [[pi]][c] '''+''' 1.0 [[amp]][c]
+
** 1.0 [[nadp]][c] '''+''' 1.0 [[mal__L]][c] '''=>''' 1.0 [[co2]][c] '''+''' 1.0 [[pyr]][c] '''+''' 1.0 [[nadph]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 ATP C10H12N5O13P3[c] '''+''' 1.0 Selenide[c] '''+''' 1.0 H2O H2O[c] '''=>''' 1.0 Selenophosphate[c] '''+''' 1.0 Phosphate[c] '''+''' 1.0 AMP C10H12N5O7P[c]
+
** 1.0 Nicotinamide adenine dinucleotide phosphate[c] '''+''' 1.0 L-Malate[c] '''=>''' 1.0 CO2 CO2[c] '''+''' 1.0 Pyruvate[c] '''+''' 1.0 Nicotinamide adenine dinucleotide phosphate - reduced[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF2567]]
+
* [[EF3316]]
 
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 +
* [[EF1206]]
 +
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 +
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 
== Pathways  ==
 
== Pathways  ==
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
−
** '''508''' reactions found over '''2349''' reactions in the full pathway
+
** '''460''' reactions found over '''2349''' reactions in the full pathway
−
* [[map00450]]: [http://www.genome.jp/dbget-bin/www_bget?map00450 map00450]
+
* [[map01200]]: [http://www.genome.jp/dbget-bin/www_bget?map01200 map01200]
−
** '''6''' reactions found over '''35''' reactions in the full pathway
+
** '''45''' reactions found over '''220''' reactions in the full pathway
 +
* [[map00710]]: [http://www.genome.jp/dbget-bin/www_bget?map00710 map00710]
 +
** '''16''' reactions found over '''71''' reactions in the full pathway
 +
* [[map00620]]: [http://www.genome.jp/dbget-bin/www_bget?map00620 map00620]
 +
** '''31''' reactions found over '''163''' reactions in the full pathway
 +
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
 +
** '''104''' reactions found over '''715''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* [[orthology]]:
 
* [[orthology]]:
 
** [[pantograph]]:
 
** [[pantograph]]:
 
*** [[e_coli_sstr_k12_substr_mg1655]]
 
*** [[e_coli_sstr_k12_substr_mg1655]]
 +
*** [[b_subtilis_subsp_subtilis_str168]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18737 18737]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18253 18253]
−
* BioCyc : META:2.7.9.3-RXN
+
* BioCyc : META:MALIC-NADP-RXN
−
* MetaNetX (MNX) Equation : MNXR104322
+
* MetaNetX (MNX) Equation : MNXR101443
−
* KEGG Reaction : R03595
+
* KEGG Reaction : R00216
−
* EC Number : 2.7.9.3
+
* EC Number : 1.1.1.40
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Selenophosphate synthase}}
+
{{#set: common name=Malic enzyme (NADP)}}
−
{{#set: gene associated=EF2567}}
+
{{#set: gene associated=EF3316|EF1206}}
−
{{#set: in pathway=map01100|map00450}}
+
{{#set: in pathway=map01100|map01200|map00710|map00620|map01120}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655}}
+
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655|b_subtilis_subsp_subtilis_str168}}

Revision as of 16:51, 10 January 2018

Reaction ME2

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Malic enzyme (NADP)
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Nicotinamide adenine dinucleotide phosphate[c] + 1.0 L-Malate[c] => 1.0 CO2 CO2[c] + 1.0 Pyruvate[c] + 1.0 Nicotinamide adenine dinucleotide phosphate - reduced[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:MALIC-NADP-RXN
  • MetaNetX (MNX) Equation : MNXR101443
  • KEGG Reaction : R00216
  • EC Number : 1.1.1.40




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