Difference between revisions of "AB6PGH"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/SERTRS SERTRS] == * direction: ** LEFT-TO-RIGHT * common name: ** Seryl-tRNA synthetase * Synonym(s...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/FAS100 FAS100] == * direction: ** LEFT-TO-RIGHT * common name: ** Fatty acid synthase n C100 * Sy...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/SERTRS SERTRS] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/FAS100 FAS100] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Seryl-tRNA synthetase
+
** Fatty acid synthase  n C100
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[ser__L]][c] '''+''' 1.0 [[trnaser]][c] '''+''' 1.0 [[atp]][c] '''=>''' 1.0 [[amp]][c] '''+''' 1.0 [[sertrna]][c] '''+''' 1.0 [[ppi]][c]
+
** 1.0 [[malcoa]][c] '''+''' 2.0 [[nadph]][c] '''+''' 1.0 [[octa]][c] '''+''' 3.0 [[h]][c] '''=>''' 1.0 [[coa]][c] '''+''' 1.0 [[h2o]][c] '''+''' 1.0 [[co2]][c] '''+''' 1.0 [[dca]][c] '''+''' 2.0 [[nadp]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 L-Serine[c] '''+''' 1.0 TRNA(Ser)[c] '''+''' 1.0 ATP C10H12N5O13P3[c] '''=>''' 1.0 AMP C10H12N5O7P[c] '''+''' 1.0 L-Seryl-tRNA(Ser)[c] '''+''' 1.0 Diphosphate[c]
+
** 1.0 Malonyl CoA C24H33N7O19P3S[c] '''+''' 2.0 Nicotinamide adenine dinucleotide phosphate - reduced[c] '''+''' 1.0 Octanoate (n-C8:0)[c] '''+''' 3.0 H+[c] '''=>''' 1.0 Coenzyme A[c] '''+''' 1.0 H2O H2O[c] '''+''' 1.0 CO2 CO2[c] '''+''' 1.0 Decanoate (n-C10:0)[c] '''+''' 2.0 Nicotinamide adenine dinucleotide phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[EF3292]]
 
−
** [[pantograph]]-[[l_plantarum_wcfs1]]
 
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 
−
* [[EF0100]]
 
−
** [[pantograph]]-[[l_plantarum_wcfs1]]
 
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[map00970]]: [http://www.genome.jp/dbget-bin/www_bget?map00970 map00970]
+
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
−
** '''23''' reactions found over '''49''' reactions in the full pathway
+
** '''460''' reactions found over '''2349''' reactions in the full pathway
 +
* [[map00061]]: [http://www.genome.jp/dbget-bin/www_bget?map00061 map00061]
 +
** '''65''' reactions found over '''160''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[gap-filling]]
−
** [[pantograph]]:
+
** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
−
*** [[e_coli_sstr_k12_substr_mg1655]]
+
*** Tool: [[meneco]]
−
*** [[l_plantarum_wcfs1]]
+
**** Comment: [[added for gapfilling]]
 
== External links  ==
 
== External links  ==
−
* MetaNetX (MNX) Equation : MNXR104350
+
* MetaNetX (MNX) Equation : MNXR99382
−
* KEGG Reaction : R03662
+
* EC Number : 2.3.1.85
−
* EC Number : 6.1.1.11
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Seryl-tRNA synthetase}}
+
{{#set: common name=Fatty acid synthase  n C100 }}
−
{{#set: gene associated=EF3292|EF0100}}
+
{{#set: in pathway=map01100|map00061}}
−
{{#set: in pathway=map00970}}
+
{{#set: reconstruction category=gap-filling}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction tool=meneco}}
−
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655|l_plantarum_wcfs1}}
+
{{#set: reconstruction comment=added for gapfilling}}

Revision as of 19:45, 18 March 2018

Reaction FAS100

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Fatty acid synthase n C100
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Malonyl CoA C24H33N7O19P3S[c] + 2.0 Nicotinamide adenine dinucleotide phosphate - reduced[c] + 1.0 Octanoate (n-C8:0)[c] + 3.0 H+[c] => 1.0 Coenzyme A[c] + 1.0 H2O H2O[c] + 1.0 CO2 CO2[c] + 1.0 Decanoate (n-C10:0)[c] + 2.0 Nicotinamide adenine dinucleotide phosphate[c]

Genes associated with this reaction

Pathways

Reconstruction information

External links

  • MetaNetX (MNX) Equation : MNXR99382
  • EC Number : 2.3.1.85




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