Difference between revisions of "ACONTa"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/SBTD_D2 SBTD_D2] == * direction: ** LEFT-TO-RIGHT * common name: ** D sorbitol dehydrogenase D fru...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/ACONTa ACONTa] == * direction: ** REVERSIBLE * common name: ** Aconitase (half-reaction A, Citrate...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/SBTD_D2 SBTD_D2] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/ACONTa ACONTa] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** D sorbitol dehydrogenase  D fructose producing
+
** Aconitase (half-reaction A, Citrate hydro-lyase)
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[sbt__D]][c] '''+''' 1.0 [[nad]][c] '''=>''' 1.0 [[nadh]][c] '''+''' 1.0 [[h]][c] '''+''' 1.0 [[fru]][c]
+
** 1.0 [[cit]][c] '''<=>''' 1.0 [[h2o]][c] '''+''' 1.0 [[acon_C]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 D-Sorbitol[c] '''+''' 1.0 Nicotinamide adenine dinucleotide[c] '''=>''' 1.0 Nicotinamide adenine dinucleotide - reduced[c] '''+''' 1.0 H+[c] '''+''' 1.0 D-Fructose[c]
+
** 1.0 Citrate[c] '''<=>''' 1.0 H2O H2O[c] '''+''' 1.0 Cis-Aconitate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[EF1826]]
 
−
** [[pantograph]]-[[l_plantarum_wcfs1]]
 
 
== Pathways  ==
 
== Pathways  ==
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
−
** '''508''' reactions found over '''2349''' reactions in the full pathway
+
** '''460''' reactions found over '''2349''' reactions in the full pathway
−
* [[map00040]]: [http://www.genome.jp/dbget-bin/www_bget?map00040 map00040]
+
* [[map00630]]: [http://www.genome.jp/dbget-bin/www_bget?map00630 map00630]
−
** '''15''' reactions found over '''54''' reactions in the full pathway
+
** '''21''' reactions found over '''129''' reactions in the full pathway
−
* [[map00051]]: [http://www.genome.jp/dbget-bin/www_bget?map00051 map00051]
+
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
−
** '''22''' reactions found over '''63''' reactions in the full pathway
+
** '''179''' reactions found over '''1054''' reactions in the full pathway
 +
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
 +
** '''104''' reactions found over '''715''' reactions in the full pathway
 +
* [[map01210]]: [http://www.genome.jp/dbget-bin/www_bget?map01210 map01210]
 +
** '''14''' reactions found over '''80''' reactions in the full pathway
 +
* [[map00720]]: [http://www.genome.jp/dbget-bin/www_bget?map00720 map00720]
 +
** '''14''' reactions found over '''157''' reactions in the full pathway
 +
* [[map00020]]: [http://www.genome.jp/dbget-bin/www_bget?map00020 map00020]
 +
** '''4''' reactions found over '''70''' reactions in the full pathway
 +
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 +
** '''135''' reactions found over '''694''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[gap-filling]]
−
** [[pantograph]]:
+
** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
−
*** [[l_plantarum_wcfs1]]
+
*** Tool: [[meneco]]
 +
**** Comment: [[added for gapfilling]]
 
== External links  ==
 
== External links  ==
−
* EC Number : 1.1.1.14
 
−
* BioCyc : META:RXN-7644
 
−
* MetaNetX (MNX) Equation : MNXR104283
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=33031 33031]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10228 10228]
−
* Reactome : REACT_R-ATH-5652195
+
* EC Number : 4.2.1.3
−
* KEGG Reaction : R00875
+
* MetaNetX (MNX) Equation : MNXR95386
−
{{#set: direction=LEFT-TO-RIGHT}}
+
* KEGG Reaction : R01325
−
{{#set: common name=D sorbitol dehydrogenase  D fructose producing }}
+
* BioCyc : META:ACONITATEDEHYDR-RXN
−
{{#set: gene associated=EF1826}}
+
{{#set: direction=REVERSIBLE}}
−
{{#set: in pathway=map01100|map00040|map00051}}
+
{{#set: common name=Aconitase (half-reaction A, Citrate hydro-lyase)}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: in pathway=map01100|map00630|map01110|map01120|map01210|map00720|map00020|map01130}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction category=gap-filling}}
−
{{#set: reconstruction source=l_plantarum_wcfs1}}
+
{{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium}}
 +
{{#set: reconstruction tool=meneco}}
 +
{{#set: reconstruction comment=added for gapfilling}}

Latest revision as of 16:13, 21 March 2018

Reaction ACONTa

  • direction:
    • REVERSIBLE
  • common name:
    • Aconitase (half-reaction A, Citrate hydro-lyase)
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Citrate[c] <=> 1.0 H2O H2O[c] + 1.0 Cis-Aconitate[c]

Genes associated with this reaction

Pathways

Reconstruction information

External links

  • RHEA:
  • EC Number : 4.2.1.3
  • MetaNetX (MNX) Equation : MNXR95386
  • KEGG Reaction : R01325
  • BioCyc : META:ACONITATEDEHYDR-RXN




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