Difference between revisions of "ACP"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PFK_3 PFK_3] == * direction: ** LEFT-TO-RIGHT * common name: ** Phosphofructokinase (s7p) * Synonym...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/MDH MDH] == * direction: ** REVERSIBLE * common name: ** Malate dehydrogenase * Synonym(s): == Rea...")
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/PFK_3 PFK_3] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/MDH MDH] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** Phosphofructokinase (s7p)
+
** Malate dehydrogenase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[s7p]][c] '''+''' 1.0 [[atp]][c] '''=>''' 1.0 [[h]][c] '''+''' 1.0 [[s17bp]][c] '''+''' 1.0 [[adp]][c]
+
** 1.0 [[nad]][c] '''+''' 1.0 [[mal__L]][c] '''<=>''' 1.0 [[nadh]][c] '''+''' 1.0 [[h]][c] '''+''' 1.0 [[oaa]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 Sedoheptulose 7-phosphate[c] '''+''' 1.0 ATP C10H12N5O13P3[c] '''=>''' 1.0 H+[c] '''+''' 1.0 Sedoheptulose 1,7-bisphosphate[c] '''+''' 1.0 ADP C10H12N5O10P2[c]
+
** 1.0 Nicotinamide adenine dinucleotide[c] '''+''' 1.0 L-Malate[c] '''<=>''' 1.0 Nicotinamide adenine dinucleotide - reduced[c] '''+''' 1.0 H+[c] '''+''' 1.0 Oxaloacetate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF1045]]
+
* [[EF0641]]
 
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 +
* [[EF0255]]
 +
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 +
* [[EF0388]]
 +
** [[pantograph]]-[[l_plantarum_wcfs1]]
 
== Pathways  ==
 
== Pathways  ==
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
** '''460''' reactions found over '''2349''' reactions in the full pathway
 
** '''460''' reactions found over '''2349''' reactions in the full pathway
−
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
+
* [[map00630]]: [http://www.genome.jp/dbget-bin/www_bget?map00630 map00630]
−
** '''179''' reactions found over '''1054''' reactions in the full pathway
+
** '''21''' reactions found over '''129''' reactions in the full pathway
 +
* [[map00720]]: [http://www.genome.jp/dbget-bin/www_bget?map00720 map00720]
 +
** '''14''' reactions found over '''157''' reactions in the full pathway
 
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
 
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
 
** '''104''' reactions found over '''715''' reactions in the full pathway
 
** '''104''' reactions found over '''715''' reactions in the full pathway
−
* [[map00051]]: [http://www.genome.jp/dbget-bin/www_bget?map00051 map00051]
+
* [[map00270]]: [http://www.genome.jp/dbget-bin/www_bget?map00270 map00270]
−
** '''22''' reactions found over '''63''' reactions in the full pathway
+
** '''25''' reactions found over '''135''' reactions in the full pathway
−
* [[map00052]]: [http://www.genome.jp/dbget-bin/www_bget?map00052 map00052]
+
* [[map01200]]: [http://www.genome.jp/dbget-bin/www_bget?map01200 map01200]
−
** '''17''' reactions found over '''67''' reactions in the full pathway
+
** '''45''' reactions found over '''220''' reactions in the full pathway
 +
* [[map00710]]: [http://www.genome.jp/dbget-bin/www_bget?map00710 map00710]
 +
** '''16''' reactions found over '''71''' reactions in the full pathway
 
* [[map00680]]: [http://www.genome.jp/dbget-bin/www_bget?map00680 map00680]
 
* [[map00680]]: [http://www.genome.jp/dbget-bin/www_bget?map00680 map00680]
 
** '''18''' reactions found over '''75''' reactions in the full pathway
 
** '''18''' reactions found over '''75''' reactions in the full pathway
−
* [[map00010]]: [http://www.genome.jp/dbget-bin/www_bget?map00010 map00010]
+
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
−
** '''24''' reactions found over '''149''' reactions in the full pathway
+
** '''179''' reactions found over '''1054''' reactions in the full pathway
 +
* [[map00620]]: [http://www.genome.jp/dbget-bin/www_bget?map00620 map00620]
 +
** '''31''' reactions found over '''163''' reactions in the full pathway
 +
* [[map00020]]: [http://www.genome.jp/dbget-bin/www_bget?map00020 map00020]
 +
** '''4''' reactions found over '''70''' reactions in the full pathway
 
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 
** '''135''' reactions found over '''694''' reactions in the full pathway
 
** '''135''' reactions found over '''694''' reactions in the full pathway
−
* [[map00030]]: [http://www.genome.jp/dbget-bin/www_bget?map00030 map00030]
 
−
** '''26''' reactions found over '''69''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
*** [[e_coli_sstr_k12_substr_mg1655]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 +
* EC Number : 1.1.1.299
 +
* BioCyc : META:MALATE-DEH-RXN
 +
* MetaNetX (MNX) Equation : MNXR101439
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31443 31443]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21432 21432]
−
* BioCyc : META:RXN0-6541
+
* Reactome : REACT_R-ATH-70979
−
* MetaNetX (MNX) Equation : MNXR102510
+
* KEGG Reaction : R00342
−
* KEGG Reaction : R01843
+
{{#set: direction=REVERSIBLE}}
−
* EC Number : 2.7.1
+
{{#set: common name=Malate dehydrogenase}}
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: gene associated=EF0641|EF0255|EF0388}}
−
{{#set: common name=Phosphofructokinase (s7p)}}
+
{{#set: in pathway=map01100|map00630|map00720|map01120|map00270|map01200|map00710|map00680|map01110|map00620|map00020|map01130}}
−
{{#set: gene associated=EF1045}}
+
−
{{#set: in pathway=map01100|map01110|map01120|map00051|map00052|map00680|map00010|map01130|map00030}}
+
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-l_plantarum_wcfs1}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655}}
 

Revision as of 19:32, 18 March 2018

Reaction MDH

  • direction:
    • REVERSIBLE
  • common name:
    • Malate dehydrogenase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Nicotinamide adenine dinucleotide[c] + 1.0 L-Malate[c] <=> 1.0 Nicotinamide adenine dinucleotide - reduced[c] + 1.0 H+[c] + 1.0 Oxaloacetate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • EC Number : 1.1.1.299
  • BioCyc : META:MALATE-DEH-RXN
  • MetaNetX (MNX) Equation : MNXR101439
  • RHEA:
  • Reactome : REACT_R-ATH-70979
  • KEGG Reaction : R00342




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