Difference between revisions of "ALAALAr"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/GLUDy GLUDy] == * direction: ** REVERSIBLE * common name: ** Glutamate dehydrogenase (NADP) * Synon...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/ALAALAr ALAALAr] == * direction: ** REVERSIBLE * common name: ** D-alanine-D-alanine ligase (revers...")
 
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/GLUDy GLUDy] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/ALAALAr ALAALAr] ==
 
* direction:
 
* direction:
 
** REVERSIBLE
 
** REVERSIBLE
 
* common name:
 
* common name:
−
** Glutamate dehydrogenase (NADP)
+
** D-alanine-D-alanine ligase (reversible)
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[nadp]][c] '''+''' 1.0 [[glu__L]][c] '''+''' 1.0 [[h2o]][c] '''<=>''' 1.0 [[nh4]][c] '''+''' 1.0 [[nadph]][c] '''+''' 1.0 [[akg]][c] '''+''' 1.0 [[h]][c]
+
** 2.0 [[ala__D]][c] '''+''' 1.0 [[atp]][c] '''<=>''' 1.0 [[adp]][c] '''+''' 1.0 [[pi]][c] '''+''' 1.0 [[alaala]][c] '''+''' 1.0 [[h]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 Nicotinamide adenine dinucleotide phosphate[c] '''+''' 1.0 L-Glutamate[c] '''+''' 1.0 H2O H2O[c] '''<=>''' 1.0 Ammonium[c] '''+''' 1.0 Nicotinamide adenine dinucleotide phosphate - reduced[c] '''+''' 1.0 2-Oxoglutarate[c] '''+''' 1.0 H+[c]
+
** 2.0 D-Alanine[c] '''+''' 1.0 ATP C10H12N5O13P3[c] '''<=>''' 1.0 ADP C10H12N5O10P2[c] '''+''' 1.0 Phosphate[c] '''+''' 1.0 D-Alanyl-D-alanine[c] '''+''' 1.0 H+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF1415]]
+
* Gene: [[EF0843]]
−
** [[pantograph]]-[[l_plantarum_wcfs1]]
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
+
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 
== Pathways  ==
 
== Pathways  ==
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
** '''460''' reactions found over '''2349''' reactions in the full pathway
 
** '''460''' reactions found over '''2349''' reactions in the full pathway
−
* [[map00220]]: [http://www.genome.jp/dbget-bin/www_bget?map00220 map00220]
+
* [[map00473]]: [http://www.genome.jp/dbget-bin/www_bget?map00473 map00473]
−
** '''9''' reactions found over '''65''' reactions in the full pathway
+
** '''2''' reactions found over '''3''' reactions in the full pathway
−
* [[map00250]]: [http://www.genome.jp/dbget-bin/www_bget?map00250 map00250]
+
* [[map00550]]: [http://www.genome.jp/dbget-bin/www_bget?map00550 map00550]
−
** '''22''' reactions found over '''93''' reactions in the full pathway
+
** '''10''' reactions found over '''27''' reactions in the full pathway
−
* [[map00910]]: [http://www.genome.jp/dbget-bin/www_bget?map00910 map00910]
+
−
** '''5''' reactions found over '''36''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
 
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
−
** Source: [[orthology-l_plantarum_wcfs1]]
+
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11612 11612]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11224 11224]
−
* BioCyc : META:GLUTDEHYD-RXN
+
* BioCyc : META:DALADALALIG-RXN
−
* MetaNetX (MNX) Equation : MNXR100086
+
* MetaNetX (MNX) Equation : MNXR95678
−
* KEGG Reaction : R00248
+
* KEGG Reaction : R01150
−
* EC Number : 1.4.1.13
+
* EC Number : 6.3.2.4
 
{{#set: direction=REVERSIBLE}}
 
{{#set: direction=REVERSIBLE}}
−
{{#set: common name=Glutamate dehydrogenase (NADP)}}
+
{{#set: common name=D-alanine-D-alanine ligase (reversible)}}
−
{{#set: gene associated=EF1415}}
+
{{#set: gene associated=EF0843}}
−
{{#set: in pathway=map01100|map00220|map00250|map00910}}
+
{{#set: in pathway=map01100|map00473|map00550}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-l_plantarum_wcfs1}}
+
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}

Latest revision as of 16:41, 21 March 2018

Reaction ALAALAr

  • direction:
    • REVERSIBLE
  • common name:
    • D-alanine-D-alanine ligase (reversible)
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 2.0 D-Alanine[c] + 1.0 ATP C10H12N5O13P3[c] <=> 1.0 ADP C10H12N5O10P2[c] + 1.0 Phosphate[c] + 1.0 D-Alanyl-D-alanine[c] + 1.0 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:DALADALALIG-RXN
  • MetaNetX (MNX) Equation : MNXR95678
  • KEGG Reaction : R01150
  • EC Number : 6.3.2.4




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