Difference between revisions of "APG3PAT161"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/ASPK ASPK] == * direction: ** REVERSIBLE * common name: ** Aspartate kinase * Synonym(s): == React...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/SPMS SPMS] == * direction: ** LEFT-TO-RIGHT * common name: ** Spermidine synthase * Synonym(s): ==...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/ASPK ASPK] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/SPMS SPMS] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Aspartate kinase
+
** Spermidine synthase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[asp__L]][c] '''+''' 1.0 [[atp]][c] '''<=>''' 1.0 [[adp]][c] '''+''' 1.0 [[4pasp]][c]
+
** 1.0 [[ptrc]][c] '''+''' 1.0 [[ametam]][c] '''=>''' 1.0 [[spmd]][c] '''+''' 1.0 [[5mta]][c] '''+''' 1.0 [[h]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 L-Aspartate[c] '''+''' 1.0 ATP C10H12N5O13P3[c] '''<=>''' 1.0 ADP C10H12N5O10P2[c] '''+''' 1.0 4-Phospho-L-aspartate[c]
+
** 1.0 Putrescine[c] '''+''' 1.0 S-Adenosylmethioninamine[c] '''=>''' 1.0 Spermidine[c] '''+''' 1.0 5-Methylthioadenosine[c] '''+''' 1.0 H+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[EF0368]]
 
−
** [[pantograph]]-[[l_plantarum_wcfs1]]
 
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 
 
== Pathways  ==
 
== Pathways  ==
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
−
** '''508''' reactions found over '''2349''' reactions in the full pathway
+
** '''460''' reactions found over '''2349''' reactions in the full pathway
−
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
+
−
** '''218''' reactions found over '''1054''' reactions in the full pathway
+
−
* [[map00300]]: [http://www.genome.jp/dbget-bin/www_bget?map00300 map00300]
+
−
** '''13''' reactions found over '''34''' reactions in the full pathway
+
−
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
+
−
** '''111''' reactions found over '''715''' reactions in the full pathway
+
−
* [[map01210]]: [http://www.genome.jp/dbget-bin/www_bget?map01210 map01210]
+
−
** '''25''' reactions found over '''80''' reactions in the full pathway
+
 
* [[map00270]]: [http://www.genome.jp/dbget-bin/www_bget?map00270 map00270]
 
* [[map00270]]: [http://www.genome.jp/dbget-bin/www_bget?map00270 map00270]
 
** '''25''' reactions found over '''135''' reactions in the full pathway
 
** '''25''' reactions found over '''135''' reactions in the full pathway
−
* [[map01230]]: [http://www.genome.jp/dbget-bin/www_bget?map01230 map01230]
+
* [[map00480]]: [http://www.genome.jp/dbget-bin/www_bget?map00480 map00480]
−
** '''83''' reactions found over '''228''' reactions in the full pathway
+
** '''10''' reactions found over '''39''' reactions in the full pathway
−
* [[map00260]]: [http://www.genome.jp/dbget-bin/www_bget?map00260 map00260]
+
* [[map00330]]: [http://www.genome.jp/dbget-bin/www_bget?map00330 map00330]
−
** '''24''' reactions found over '''133''' reactions in the full pathway
+
** '''22''' reactions found over '''149''' reactions in the full pathway
−
* [[map00261]]: [http://www.genome.jp/dbget-bin/www_bget?map00261 map00261]
+
* [[map00410]]: [http://www.genome.jp/dbget-bin/www_bget?map00410 map00410]
−
** '''3''' reactions found over '''8''' reactions in the full pathway
+
** '''8''' reactions found over '''91''' reactions in the full pathway
−
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
+
−
** '''156''' reactions found over '''694''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* [[gap-filling]]:
−
** [[pantograph]]:
+
** [[meneco]]:
−
*** [[e_coli_sstr_k12_substr_mg1655]]
+
*** [[added for gapfilling]]
−
*** [[l_plantarum_wcfs1]]
+
−
*** [[b_subtilis_subsp_subtilis_str168]]
+
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23776 23776]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12721 12721]
−
* BioCyc : META:ASPARTATEKIN-RXN
+
* EC Number : 2.5.1.16
−
* MetaNetX (MNX) Equation : MNXR96085
+
* MetaNetX (MNX) Equation : MNXR95860
−
* KEGG Reaction : R00480
+
* KEGG Reaction : R01920
−
* EC Number : 2.7.2.4
+
* BioCyc : META:SPERMIDINESYN-RXN
−
{{#set: direction=REVERSIBLE}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Aspartate kinase}}
+
{{#set: common name=Spermidine synthase}}
−
{{#set: gene associated=EF0368}}
+
{{#set: in pathway=map01100|map00270|map00480|map00330|map00410}}
−
{{#set: in pathway=map01100|map01110|map00300|map01120|map01210|map00270|map01230|map00260|map00261|map01130}}
+
{{#set: reconstruction category=gap-filling}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction tool=meneco}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction source=added for gapfilling}}
−
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655|l_plantarum_wcfs1|b_subtilis_subsp_subtilis_str168}}
+

Revision as of 17:16, 10 January 2018

Reaction SPMS

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Spermidine synthase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Putrescine[c] + 1.0 S-Adenosylmethioninamine[c] => 1.0 Spermidine[c] + 1.0 5-Methylthioadenosine[c] + 1.0 H+[c]

Genes associated with this reaction

Pathways

Reconstruction information

External links

  • RHEA:
  • EC Number : 2.5.1.16
  • MetaNetX (MNX) Equation : MNXR95860
  • KEGG Reaction : R01920
  • BioCyc : META:SPERMIDINESYN-RXN




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