Difference between revisions of "Adprib"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/SDPDS SDPDS] == * direction: ** LEFT-TO-RIGHT * common name: ** Succinyl-diaminopimelate desuccinyl...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/CYTOM CYTOM] == * direction: ** REVERSIBLE * common name: ** Cytosine 5 methyltransferase * Synonym...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
== Reaction [http://bigg.ucsd.edu/universal/reactions/SDPDS SDPDS] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/CYTOM CYTOM] ==
 
* direction:
 
* direction:
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
** Succinyl-diaminopimelate desuccinylase
+
** Cytosine 5 methyltransferase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
** 1.0 [[h2o]][c] '''+''' 1.0 [[sl26da]][c] '''=>''' 1.0 [[26dap_LL]][c] '''+''' 1.0 [[succ]][c]
+
** 1.0 [[amet]][c] '''+''' 1.0 [[csn]][c] '''<=>''' 1.0 [[5mcsn]][c] '''+''' 1.0 [[ahcys]][c] '''+''' 1.0 [[h]][c]
 
* With common name(s):
 
* With common name(s):
** 1.0 H2O H2O[c] '''+''' 1.0 N-Succinyl-LL-2,6-diaminoheptanedioate[c] '''=>''' 1.0 LL-2,6-Diaminoheptanedioate[c] '''+''' 1.0 Succinate[c]
+
** 1.0 S-Adenosyl-L-methionine[c] '''+''' 1.0 Cytosine[c] '''<=>''' 1.0 5-Methylcytosine[c] '''+''' 1.0 S-Adenosyl-L-homocysteine[c] '''+''' 1.0 H+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
* [[EF3178]]
+
* [[EF2340]]
** [[pantograph]]-[[l_plantarum_wcfs1]]
+
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
+
 
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 
== Pathways  ==
 
== Pathways  ==
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
** '''460''' reactions found over '''2349''' reactions in the full pathway
 
* [[map01230]]: [http://www.genome.jp/dbget-bin/www_bget?map01230 map01230]
 
** '''56''' reactions found over '''228''' reactions in the full pathway
 
* [[map00300]]: [http://www.genome.jp/dbget-bin/www_bget?map00300 map00300]
 
** '''13''' reactions found over '''34''' reactions in the full pathway
 
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
 
** '''104''' reactions found over '''715''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* [[orthology]]:
+
* Category: [[orthology]]
** [[pantograph]]:
+
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
*** [[e_coli_sstr_k12_substr_mg1655]]
+
*** Tool: [[pantograph]]
*** [[l_plantarum_wcfs1]]
+
*** [[b_subtilis_subsp_subtilis_str168]]
+
 
== External links  ==
 
== External links  ==
* RHEA:
+
* MetaNetX (MNX) Equation : MNXR97062
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22608 22608]
+
* EC Number : 2.1.1.37
* BioCyc : META:SUCCDIAMINOPIMDESUCC-RXN
+
{{#set: direction=REVERSIBLE}}
* MetaNetX (MNX) Equation : MNXR104300
+
{{#set: common name=Cytosine 5 methyltransferase}}
* KEGG Reaction : R02734
+
{{#set: gene associated=EF2340}}
* EC Number : 3.5.1.18
+
{{#set: in pathway=}}
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: common name=Succinyl-diaminopimelate desuccinylase}}
+
{{#set: gene associated=EF3178}}
+
{{#set: in pathway=map01100|map01230|map00300|map01120}}
+
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-b_subtilis_subsp_subtilis_str168}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655|l_plantarum_wcfs1|b_subtilis_subsp_subtilis_str168}}
 

Revision as of 19:34, 18 March 2018

Reaction CYTOM

  • direction:
    • REVERSIBLE
  • common name:
    • Cytosine 5 methyltransferase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 S-Adenosyl-L-methionine[c] + 1.0 Cytosine[c] <=> 1.0 5-Methylcytosine[c] + 1.0 S-Adenosyl-L-homocysteine[c] + 1.0 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • MetaNetX (MNX) Equation : MNXR97062
  • EC Number : 2.1.1.37