Difference between revisions of "CHORM"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/G6PDA G6PDA] == * direction: ** LEFT-TO-RIGHT * common name: ** Glucosamine-6-phosphate deaminase *...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/CHORM CHORM] == * direction: ** LEFT-TO-RIGHT * common name: ** Chorismate mutase * Synonym(s): ==...")
 
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/G6PDA G6PDA] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/CHORM CHORM] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Glucosamine-6-phosphate deaminase
+
** Chorismate mutase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[gam6p]][c] '''+''' 1.0 [[h2o]][c] '''=>''' 1.0 [[f6p]][c] '''+''' 1.0 [[nh4]][c]
+
** 1.0 [[chor]][c] '''=>''' 1.0 [[pphn]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 D-Glucosamine 6-phosphate[c] '''+''' 1.0 H2O H2O[c] '''=>''' 1.0 D-Fructose 6-phosphate[c] '''+''' 1.0 Ammonium[c]
+
** 1.0 Chorismate[c] '''=>''' 1.0 Prephenate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF0466]]
+
* Gene: [[EF1562]]
−
** [[pantograph]]-[[l_plantarum_wcfs1]]
+
** Source: [[orthology-l_plantarum_wcfs1]]
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
+
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
+
* Gene: [[EF1568]]
 +
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
 
== Pathways  ==
 
== Pathways  ==
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
** '''460''' reactions found over '''2349''' reactions in the full pathway
 
** '''460''' reactions found over '''2349''' reactions in the full pathway
−
* [[map00520]]: [http://www.genome.jp/dbget-bin/www_bget?map00520 map00520]
+
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
−
** '''24''' reactions found over '''80''' reactions in the full pathway
+
** '''135''' reactions found over '''694''' reactions in the full pathway
 +
* [[map00400]]: [http://www.genome.jp/dbget-bin/www_bget?map00400 map00400]
 +
** '''13''' reactions found over '''59''' reactions in the full pathway
 +
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 +
** '''179''' reactions found over '''1054''' reactions in the full pathway
 +
* [[map01230]]: [http://www.genome.jp/dbget-bin/www_bget?map01230 map01230]
 +
** '''56''' reactions found over '''228''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
Line 33: Line 40:
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
* MetaNetX (MNX) Equation : MNXR99905
+
* RHEA:
−
* KEGG Reaction : R00765
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13897 13897]
−
* EC Number : 3.5.99.6
+
* BioCyc : META:CHORISMATEMUT-RXN
 +
* MetaNetX (MNX) Equation : MNXR96708
 +
* KEGG Reaction : R01715
 +
* EC Number : 5.4.99.5
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Glucosamine-6-phosphate deaminase}}
+
{{#set: common name=Chorismate mutase}}
−
{{#set: gene associated=EF0466}}
+
{{#set: gene associated=EF1562|EF1568}}
−
{{#set: in pathway=map01100|map00520}}
+
{{#set: in pathway=map01100|map01130|map00400|map01110|map01230}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168|orthology-l_plantarum_wcfs1}}
 
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168|orthology-l_plantarum_wcfs1}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}

Latest revision as of 16:41, 21 March 2018

Reaction CHORM

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Chorismate mutase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Chorismate[c] => 1.0 Prephenate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:CHORISMATEMUT-RXN
  • MetaNetX (MNX) Equation : MNXR96708
  • KEGG Reaction : R01715
  • EC Number : 5.4.99.5




Retrieved from "http://gem-aureme.irisa.fr/efaecV583/index.php?title=CHORM&oldid=11012"