Difference between revisions of "Category:Pathway"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/ALATRS ALATRS] == * direction: ** LEFT-TO-RIGHT * common name: ** Alanyl-tRNA synthetase * Synonym(...")
 
(Created page with "* navigation ** mainpage|mainpage-description ** randompage-url|randompage ** Special:ListFiles|Files * Metabolic network components ** Category:Reaction|Reaction ** Category:...")
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[[Category:Reaction]]
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* navigation
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== Reaction [http://bigg.ucsd.edu/universal/reactions/ALATRS ALATRS] ==
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** mainpage|mainpage-description
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* direction:
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** randompage-url|randompage
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** LEFT-TO-RIGHT
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** Special:ListFiles|Files
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* common name:
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* Metabolic network components
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** Alanyl-tRNA synthetase
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** Category:Reaction|Reaction
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* Synonym(s):
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** Category:Gene|Gene
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** Category:Pathway|Pathway
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== Reaction Formula ==
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** Category:Metabolite|Metabolite
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* With identifiers:
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* Reconstruction categories
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** 1.0 [[atp]][c] '''+''' 1.0 [[ala__L]][c] '''+''' 1.0 [[trnaala]][c] '''=>''' 1.0 [[amp]][c] '''+''' 1.0 [[alatrna]][c] '''+''' 1.0 [[ppi]][c]
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** gap-filling|gap-filling
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* With common name(s):
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** manual|manual
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** 1.0 ATP C10H12N5O13P3[c] '''+''' 1.0 L-Alanine[c] '''+''' 1.0 TRNA(Ala)[c] '''=>''' 1.0 AMP C10H12N5O7P[c] '''+''' 1.0 L-Alanyl-tRNA(Ala)[c] '''+''' 1.0 Diphosphate[c]
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** orthology|orthology
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* Reconstruction tools
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== Genes associated with this reaction  ==
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** meneco|meneco
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Genes have been associated with this reaction based on different elements listed below.
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** pantograph|pantograph
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* [[EF1379]]
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* Reconstruction sources
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** [[pantograph]]-[[l_plantarum_wcfs1]]
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** added for gapfilling|added for gapfilling
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** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
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** added to manage seeds from boundary to extracellular compartment|added to manage seeds from boundary to extracellular compartment
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== Pathways  ==
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** added to manage seeds from extracellular to cytosol compartment|added to manage seeds from extracellular to cytosol compartment
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* [[map00970]]: [http://www.genome.jp/dbget-bin/www_bget?map00970 map00970]
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** b_subtilis_subsp_subtilis_str168|b_subtilis_subsp_subtilis_str168
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** '''23''' reactions found over '''49''' reactions in the full pathway
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** curation_from_orthology|curation_from_orthology
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== Reconstruction information  ==
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** e_coli_sstr_k12_substr_mg1655|e_coli_sstr_k12_substr_mg1655
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* [[orthology]]:
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** l_plantarum_wcfs1|l_plantarum_wcfs1
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** [[pantograph]]:
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** manual curation|manual curation
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*** [[e_coli_sstr_k12_substr_mg1655]]
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** reaction added for biomass|reaction added for biomass
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*** [[l_plantarum_wcfs1]]
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** reaction added for biomass, from model l.plantarum|reaction added for biomass, from model l.plantarum
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== External links  ==
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** this was a reaction occurring in the perisplasm of e. coli|this was a reaction occurring in the perisplasm of e. coli
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* Reactome : REACT_R-HSA-379864
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* MetaNetX (MNX) Equation : MNXR95701
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* EC Number : 6.1.1.7
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Alanyl-tRNA synthetase}}
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{{#set: gene associated=EF1379}}
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{{#set: in pathway=map00970}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655|l_plantarum_wcfs1}}
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Revision as of 17:19, 10 January 2018

  • navigation
    • mainpage|mainpage-description
    • randompage-url|randompage
    • Special:ListFiles|Files
  • Metabolic network components
    • Category:Reaction|Reaction
    • Category:Gene|Gene
    • Category:Pathway|Pathway
    • Category:Metabolite|Metabolite
  • Reconstruction categories
    • gap-filling|gap-filling
    • manual|manual
    • orthology|orthology
  • Reconstruction tools
    • meneco|meneco
    • pantograph|pantograph
  • Reconstruction sources
    • added for gapfilling|added for gapfilling
    • added to manage seeds from boundary to extracellular compartment|added to manage seeds from boundary to extracellular compartment
    • added to manage seeds from extracellular to cytosol compartment|added to manage seeds from extracellular to cytosol compartment
    • b_subtilis_subsp_subtilis_str168|b_subtilis_subsp_subtilis_str168
    • curation_from_orthology|curation_from_orthology
    • e_coli_sstr_k12_substr_mg1655|e_coli_sstr_k12_substr_mg1655
    • l_plantarum_wcfs1|l_plantarum_wcfs1
    • manual curation|manual curation
    • reaction added for biomass|reaction added for biomass
    • reaction added for biomass, from model l.plantarum|reaction added for biomass, from model l.plantarum
    • this was a reaction occurring in the perisplasm of e. coli|this was a reaction occurring in the perisplasm of e. coli
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