Difference between revisions of "DARTAL"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/ACPS1 ACPS1] == * direction: ** LEFT-TO-RIGHT * common name: ** Acyl-carrier protein synthase * Syn...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/DARTAL DARTAL] == * direction: ** LEFT-TO-RIGHT * common name: ** D Alanine ribitol teichoic acid l...")
 
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/ACPS1 ACPS1] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/DARTAL DARTAL] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Acyl-carrier protein synthase
+
** D Alanine ribitol teichoic acid ligase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[apoACP]][c] '''+''' 1.0 [[coa]][c] '''=>''' 1.0 [[pap]][c] '''+''' 1.0 [[h]][c] '''+''' 1.0 [[ACP]][c]
+
** 1.0 [[RTA]][c] '''+''' 25.0 [[atp]][c] '''+''' 25.0 [[ala__D]][c] '''=>''' 25.0 [[pi]][c] '''+''' 1.0 [[RTAala]][c] '''+''' 25.0 [[adp]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 Apoprotein [acyl carrier protein][c] '''+''' 1.0 Coenzyme A[c] '''=>''' 1.0 Adenosine 3',5'-bisphosphate[c] '''+''' 1.0 H+[c] '''+''' 1.0 Acyl carrier protein[c]
+
** 1.0 teichoic_acid_containing_ribitol_P[c] '''+''' 25.0 ATP C10H12N5O13P3[c] '''+''' 25.0 D-Alanine[c] '''=>''' 25.0 Phosphate[c] '''+''' 1.0 ribitol_teichoic_acid__n25__with_D_Ala_substitutions[c] '''+''' 25.0 ADP C10H12N5O10P2[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF0848]]
+
* Gene: [[EF2748]]
−
** [[pantograph]]-[[l_plantarum_wcfs1]]
+
** Source: [[orthology-l_plantarum_wcfs1]]
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
+
* Gene: [[EF2749]]
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
+
** Source: [[orthology-l_plantarum_wcfs1]]
−
* [[EF3111]]
+
* Gene: [[EF2746]]
−
** [[pantograph]]-[[l_plantarum_wcfs1]]
+
** Source: [[orthology-l_plantarum_wcfs1]]
 +
* Gene: [[EF2747]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[map00770]]: [http://www.genome.jp/dbget-bin/www_bget?map00770 map00770]
 
−
** '''17''' reactions found over '''75''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
−
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 
−
*** Tool: [[pantograph]]
 
 
** Source: [[orthology-l_plantarum_wcfs1]]
 
** Source: [[orthology-l_plantarum_wcfs1]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-curation_from_orthology]]
 
== External links  ==
 
== External links  ==
−
* MetaNetX (MNX) Equation : MNXR95403
 
−
* EC Number : 2.7.8.7
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Acyl-carrier protein synthase}}
+
{{#set: common name=D Alanine ribitol teichoic acid ligase}}
−
{{#set: gene associated=EF0848|EF3111}}
+
{{#set: gene associated=EF2748|EF2749|EF2746|EF2747}}
−
{{#set: in pathway=map00770}}
+
{{#set: in pathway=}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction category=orthology|manual}}
−
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168|orthology-l_plantarum_wcfs1}}
+
{{#set: reconstruction source=manual-curation_from_orthology|orthology-l_plantarum_wcfs1}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}

Latest revision as of 16:26, 21 March 2018

Reaction DARTAL

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • D Alanine ribitol teichoic acid ligase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 teichoic_acid_containing_ribitol_P[c] + 25.0 ATP C10H12N5O13P3[c] + 25.0 D-Alanine[c] => 25.0 Phosphate[c] + 1.0 ribitol_teichoic_acid__n25__with_D_Ala_substitutions[c] + 25.0 ADP C10H12N5O10P2[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/efaecV583/index.php?title=DARTAL&oldid=10162"