Difference between revisions of "DDGLK"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/FUMt2_3 FUMt2_3] == * direction: ** LEFT-TO-RIGHT * common name: ** Fumarate transport via proton s...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/DDGLK DDGLK] == * direction: ** LEFT-TO-RIGHT * common name: ** 2-dehydro-3-deoxygluconokinase * Sy...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/FUMt2_3 FUMt2_3] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/DDGLK DDGLK] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Fumarate transport via proton symport (3 H)
+
** 2-dehydro-3-deoxygluconokinase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[fum]][e] '''+''' 3.0 [[h]][e] '''=>''' 1.0 [[fum]][c] '''+''' 3.0 [[h]][c]
+
** 1.0 [[2ddglcn]][c] '''+''' 1.0 [[atp]][c] '''=>''' 1.0 [[adp]][c] '''+''' 1.0 [[h]][c] '''+''' 1.0 [[2ddg6p]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 Fumarate[e] '''+''' 3.0 H+[e] '''=>''' 1.0 Fumarate[c] '''+''' 3.0 H+[c]
+
** 1.0 2-Dehydro-3-deoxy-D-gluconate[c] '''+''' 1.0 ATP C10H12N5O13P3[c] '''=>''' 1.0 ADP C10H12N5O10P2[c] '''+''' 1.0 H+[c] '''+''' 1.0 2-Dehydro-3-deoxy-D-gluconate 6-phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF1920]]
+
* Gene: [[EF0424]]
−
** 2_reaction_to_add_delete
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
* Gene: [[EF0840]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
* Gene: [[EF2265]]
 +
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[map01200]]: [http://www.genome.jp/dbget-bin/www_bget?map01200 map01200]
 +
** '''45''' reactions found over '''220''' reactions in the full pathway
 +
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 +
** '''460''' reactions found over '''2349''' reactions in the full pathway
 +
* [[map00030]]: [http://www.genome.jp/dbget-bin/www_bget?map00030 map00030]
 +
** '''26''' reactions found over '''69''' reactions in the full pathway
 +
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
 +
** '''104''' reactions found over '''715''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[manual]]
+
* Category: [[orthology]]
−
** Source: [[manual-2_reaction_to_add_delete]]
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
*** Comment: [[this was a reaction occurring in the perisplasm of e. coli]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
* MetaNetX (MNX) Equation : MNXR99712
+
* RHEA:
−
* BioCyc : META:TRANS-RXN-299
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14797 14797]
 +
* BioCyc : META:DEOXYGLUCONOKIN-RXN
 +
* MetaNetX (MNX) Equation : MNXR97216
 +
* KEGG Reaction : R01541
 +
* EC Number : 2.7.1.178
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Fumarate transport via proton symport (3 H)}}
+
{{#set: common name=2-dehydro-3-deoxygluconokinase}}
−
{{#set: gene associated=EF1920}}
+
{{#set: gene associated=EF0424|EF0840|EF2265}}
−
{{#set: in pathway=}}
+
{{#set: in pathway=map01200|map01100|map00030|map01120}}
−
{{#set: reconstruction category=manual}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction source=manual-2_reaction_to_add_delete}}
+
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168|orthology-l_plantarum_wcfs1}}
−
{{#set: reconstruction comment=this was a reaction occurring in the perisplasm of e. coli}}
+
{{#set: reconstruction tool=pantograph}}

Latest revision as of 16:35, 21 March 2018

Reaction DDGLK

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 2-dehydro-3-deoxygluconokinase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 2-Dehydro-3-deoxy-D-gluconate[c] + 1.0 ATP C10H12N5O13P3[c] => 1.0 ADP C10H12N5O10P2[c] + 1.0 H+[c] + 1.0 2-Dehydro-3-deoxy-D-gluconate 6-phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:DEOXYGLUCONOKIN-RXN
  • MetaNetX (MNX) Equation : MNXR97216
  • KEGG Reaction : R01541
  • EC Number : 2.7.1.178




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