Difference between revisions of "DPMVD"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/UAAGLS1 UAAGLS1] == * direction: ** LEFT-TO-RIGHT * common name: ** UAAGLS1 * Synonym(s): == React...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/DPMVD DPMVD] == * direction: ** LEFT-TO-RIGHT * common name: ** Diphosphomevalonate decarboxylase *...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/UAAGLS1 UAAGLS1] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/DPMVD DPMVD] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** UAAGLS1
+
** Diphosphomevalonate decarboxylase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[lys__L]][c] '''+''' 1.0 [[uamag]][c] '''+''' 1.0 [[atp]][c] '''=>''' 1.0 [[pi]][c] '''+''' 1.0 [[adp]][c] '''+''' 1.0 [[h]][c] '''+''' 1.0 [[uAgl]][c]
+
** 1.0 [[atp]][c] '''+''' 1.0 [[5dpmev]][c] '''=>''' 1.0 [[adp]][c] '''+''' 1.0 [[co2]][c] '''+''' 1.0 [[ipdp]][c] '''+''' 1.0 [[pi]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 L-Lysine[c] '''+''' 1.0 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate[c] '''+''' 1.0 ATP C10H12N5O13P3[c] '''=>''' 1.0 Phosphate[c] '''+''' 1.0 ADP C10H12N5O10P2[c] '''+''' 1.0 H+[c] '''+''' 1.0 UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysine[c]
+
** 1.0 ATP C10H12N5O13P3[c] '''+''' 1.0 R  5 Diphosphomevalonate C6H10O10P2[c] '''=>''' 1.0 ADP C10H12N5O10P2[c] '''+''' 1.0 CO2 CO2[c] '''+''' 1.0 Isopentenyl diphosphate[c] '''+''' 1.0 Phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF2585]]
+
* Gene: [[EF0903]]
−
** [[pantograph]]-[[l_plantarum_wcfs1]]
+
** Source: [[orthology-l_plantarum_wcfs1]]
 
== Pathways  ==
 
== Pathways  ==
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
** '''460''' reactions found over '''2349''' reactions in the full pathway
 
** '''460''' reactions found over '''2349''' reactions in the full pathway
−
* [[map00550]]: [http://www.genome.jp/dbget-bin/www_bget?map00550 map00550]
+
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
−
** '''10''' reactions found over '''27''' reactions in the full pathway
+
** '''135''' reactions found over '''694''' reactions in the full pathway
 +
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 +
** '''179''' reactions found over '''1054''' reactions in the full pathway
 +
* [[map00900]]: [http://www.genome.jp/dbget-bin/www_bget?map00900 map00900]
 +
** '''14''' reactions found over '''67''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-l_plantarum_wcfs1]]
−
*** [[l_plantarum_wcfs1]]
+
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
* MetaNetX (MNX) Equation : MNXR105014
+
* RHEA:
−
* EC Number : 6.3.2.7
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23732 23732]
 +
* BioCyc : META:DIPHOSPHOMEVALONTE-DECARBOXYLASE-RXN
 +
* MetaNetX (MNX) Equation : MNXR97776
 +
* KEGG Reaction : R01121
 +
* EC Number : 4.1.1.33
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=UAAGLS1}}
+
{{#set: common name=Diphosphomevalonate decarboxylase}}
−
{{#set: gene associated=EF2585}}
+
{{#set: gene associated=EF0903}}
−
{{#set: in pathway=map01100|map00550}}
+
{{#set: in pathway=map01100|map01130|map01110|map00900}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-l_plantarum_wcfs1}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=l_plantarum_wcfs1}}
 

Latest revision as of 16:45, 21 March 2018

Reaction DPMVD

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Diphosphomevalonate decarboxylase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 ATP C10H12N5O13P3[c] + 1.0 R 5 Diphosphomevalonate C6H10O10P2[c] => 1.0 ADP C10H12N5O10P2[c] + 1.0 CO2 CO2[c] + 1.0 Isopentenyl diphosphate[c] + 1.0 Phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:DIPHOSPHOMEVALONTE-DECARBOXYLASE-RXN
  • MetaNetX (MNX) Equation : MNXR97776
  • KEGG Reaction : R01121
  • EC Number : 4.1.1.33




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