Difference between revisions of "EDA"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/ALAt2pp_copy1 ALAt2pp_copy1] == * direction: ** LEFT-TO-RIGHT * common name: ** L-alanine transport...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/EDA EDA] == * direction: ** LEFT-TO-RIGHT * common name: ** 2-dehydro-3-deoxy-phosphogluconate aldo...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/ALAt2pp_copy1 ALAt2pp_copy1] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/EDA EDA] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** L-alanine transport in via proton symport (periplasm)
+
** 2-dehydro-3-deoxy-phosphogluconate aldolase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[ala__L]][p] '''+''' 1.0 [[h]][p] '''=>''' 1.0 [[ala__L]][c] '''+''' 1.0 [[h]][c]
+
** 1.0 [[2ddg6p]][c] '''=>''' 1.0 [[g3p]][c] '''+''' 1.0 [[pyr]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 L-Alanine[p] '''+''' 1.0 H+[p] '''=>''' 1.0 L-Alanine[c] '''+''' 1.0 H+[c]
+
** 1.0 2-Dehydro-3-deoxy-D-gluconate 6-phosphate[c] '''=>''' 1.0 Glyceraldehyde 3-phosphate[c] '''+''' 1.0 Pyruvate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF1103]]
+
* Gene: [[EF2266]]
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
+
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
* Gene: [[EF0423]]
 +
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
* Gene: [[EF3134]]
 +
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 +
** '''460''' reactions found over '''2349''' reactions in the full pathway
 +
* [[map00030]]: [http://www.genome.jp/dbget-bin/www_bget?map00030 map00030]
 +
** '''26''' reactions found over '''69''' reactions in the full pathway
 +
* [[map01200]]: [http://www.genome.jp/dbget-bin/www_bget?map01200 map01200]
 +
** '''45''' reactions found over '''220''' reactions in the full pathway
 +
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
 +
** '''104''' reactions found over '''715''' reactions in the full pathway
 +
* [[map00052]]: [http://www.genome.jp/dbget-bin/www_bget?map00052 map00052]
 +
** '''17''' reactions found over '''67''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
*** [[e_coli_sstr_k12_substr_mg1655]]
+
*** Tool: [[pantograph]]
−
* [[manual]]:
+
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
−
** [[curation_from_orthology]]
+
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17089 17089]
 +
* BioCyc : META:KDPGALDOL-RXN
 +
* MetaNetX (MNX) Equation : MNXR97897
 +
* KEGG Reaction : R05605
 +
* EC Number : 4.1.2.14
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=L-alanine transport in via proton symport (periplasm)}}
+
{{#set: common name=2-dehydro-3-deoxy-phosphogluconate aldolase}}
−
{{#set: gene associated=EF1103}}
+
{{#set: gene associated=EF2266|EF0423|EF3134}}
−
{{#set: in pathway=}}
+
{{#set: in pathway=map01100|map00030|map01200|map01120|map00052}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655}}
 
−
{{#set: reconstruction category=manual}}
 
−
{{#set: reconstruction source=curation_from_orthology}}
 

Latest revision as of 16:19, 21 March 2018

Reaction EDA

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 2-dehydro-3-deoxy-phosphogluconate aldolase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 2-Dehydro-3-deoxy-D-gluconate 6-phosphate[c] => 1.0 Glyceraldehyde 3-phosphate[c] + 1.0 Pyruvate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:KDPGALDOL-RXN
  • MetaNetX (MNX) Equation : MNXR97897
  • KEGG Reaction : R05605
  • EC Number : 4.1.2.14




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