Difference between revisions of "ExchangeSeed ade"

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(Created page with "Category:Pathway == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00260 map00260] == * common_name: ** Glycine, serine and threonine metabolism * Synonym(s): == Rea...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/ExchangeSeed_ade ExchangeSeed_ade] == * direction: ** REVERSIBLE * Synonym(s): == Reaction Formula...")
 
Line 1: Line 1:
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://www.genome.jp/dbget-bin/www_bget?map00260 map00260] ==
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== Reaction [http://bigg.ucsd.edu/universal/reactions/ExchangeSeed_ade ExchangeSeed_ade] ==
−
* common_name:
+
* direction:
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** Glycine, serine and threonine metabolism
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** REVERSIBLE
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction(s) found ==
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== Reaction Formula ==
−
'''23''' reactions found over '''133''' reactions in the full pathway
+
* With identifiers:
−
* [[AGTi]]
+
** 1.0 [[ade]][C-BOUNDARY] '''<=>''' 1.0 [[ade]][e]
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** 0 associated gene:
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* With common name(s):
−
** 1 reconstruction source(s) associated:
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** 1.0 Adenine[C-BOUNDARY] '''<=>''' 1.0 Adenine[e]
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*** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
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−
* [[APPLDHr]]
+
== Genes associated with this reaction  ==
−
** 1 associated gene(s):
+
== Pathways  ==
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*** [[EF1358]]
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== Reconstruction information  ==
−
** 1 reconstruction source(s) associated:
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* Category: [[manual]]
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*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
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** Source: [[manual-import_from_medium]]
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* [[ASAD]]
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*** Comment: [[added to manage seeds from boundary to extracellular compartment]]
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** 1 associated gene(s):
+
−
*** [[EF1183]]
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−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
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−
*** [[orthology-l_plantarum_wcfs1]]
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−
* [[ASPK]]
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−
** 1 associated gene(s):
+
−
*** [[EF0368]]
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−
** 3 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
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−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
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−
*** [[orthology-l_plantarum_wcfs1]]
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−
* [[ATHRDHr]]
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−
** 1 associated gene(s):
+
−
*** [[EF2956]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
−
* [[FOMETRi]]
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−
** 1 associated gene(s):
+
−
*** [[EF2791]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
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−
* [[GACMTRc]]
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−
** 0 associated gene:
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
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−
* [[GHMT2r]]
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−
** 1 associated gene(s):
+
−
*** [[EF2550]]
+
−
** 3 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
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−
*** [[orthology-l_plantarum_wcfs1]]
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−
* [[GLYAMDTRc]]
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−
** 0 associated gene:
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
+
−
* [[GLYCK]]
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−
** 1 associated gene(s):
+
−
*** [[EF2646]]
+
−
** 3 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
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−
*** [[orthology-l_plantarum_wcfs1]]
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−
* [[GLYCK2]]
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−
** 1 associated gene(s):
+
−
*** [[EF2646]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
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−
* [[GLYTA]]
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−
** 0 associated gene:
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
+
−
* [[HPYRRx]]
+
−
** 1 associated gene(s):
+
−
*** [[EF3141]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
−
* [[HPYRRy]]
+
−
** 1 associated gene(s):
+
−
*** [[EF3141]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
−
* [[HSDy]]
+
−
** 2 associated gene(s):
+
−
*** [[EF0368]]
+
−
*** [[EF2422]]
+
−
** 3 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
−
*** [[orthology-l_plantarum_wcfs1]]
+
−
* [[HSK]]
+
−
** 1 associated gene(s):
+
−
*** [[EF2420]]
+
−
** 3 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
−
*** [[orthology-l_plantarum_wcfs1]]
+
−
* [[PGCD]]
+
−
** 2 associated gene(s):
+
−
*** [[EF2901]]
+
−
*** [[EF3141]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-l_plantarum_wcfs1]]
+
−
* [[PGM]]
+
−
** 2 associated gene(s):
+
−
*** [[EF2664]]
+
−
*** [[EF0195]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
−
* [[SERD_D]]
+
−
** 1 associated gene(s):
+
−
*** [[EF2579]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-l_plantarum_wcfs1]]
+
−
* [[SERD_L]]
+
−
** 4 associated gene(s):
+
−
*** [[EF0099]]
+
−
*** [[EF2722]]
+
−
*** [[EF0098]]
+
−
*** [[EF2721]]
+
−
** 3 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
−
*** [[orthology-l_plantarum_wcfs1]]
+
−
* [[THFAT]]
+
−
** 1 associated gene(s):
+
−
*** [[EF2550]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
−
* [[THRD_L]]
+
−
** 1 associated gene(s):
+
−
*** [[EF2421]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
−
* [[THRS]]
+
−
** 1 associated gene(s):
+
−
*** [[EF2421]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
−
== Reaction(s) not found ==
+
−
* [http://bigg.ucsd.edu/universal/reactions/2AMACHYD 2AMACHYD]
+
−
* [http://bigg.ucsd.edu/universal/reactions/34DHOXPEGOX 34DHOXPEGOX]
+
−
* [http://bigg.ucsd.edu/universal/reactions/3HXKYNOXDA 3HXKYNOXDA]
+
−
* [http://bigg.ucsd.edu/universal/reactions/3MOXTYROX 3MOXTYROX]
+
−
* [http://bigg.ucsd.edu/universal/reactions/41R1H2MAE12BOOX 41R1H2MAE12BOOX]
+
−
* [http://bigg.ucsd.edu/universal/reactions/41R2A1H12BOOX 41R2A1H12BOOX]
+
−
* [http://bigg.ucsd.edu/universal/reactions/4HTHRS 4HTHRS]
+
−
* [http://bigg.ucsd.edu/universal/reactions/5HOXINOXDA 5HOXINOXDA]
+
−
* [http://bigg.ucsd.edu/universal/reactions/5HXKYNOXDA 5HXKYNOXDA]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AGTim AGTim]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AGTix AGTix]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ALASm ALASm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ALCD22xi ALCD22xi]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ALCD22xim ALCD22xim]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ALCD23xi ALCD23xi]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ALCD23xim ALCD23xim]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AOBUTDs AOBUTDs]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AOBUTDsm AOBUTDsm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AOBUTDxs AOBUTDxs]
+
−
* [http://bigg.ucsd.edu/universal/reactions/APRTO2 APRTO2]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ASADH ASADH]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ASPK_1 ASPK_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/BETALDHx BETALDHx]
+
−
* [http://bigg.ucsd.edu/universal/reactions/BETALDHxm BETALDHxm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/BETALDHy BETALDHy]
+
−
* [http://bigg.ucsd.edu/universal/reactions/BHMT BHMT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/CHOLD CHOLD]
+
−
* [http://bigg.ucsd.edu/universal/reactions/CHOLD2m CHOLD2m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/CYS CYS]
+
−
* [http://bigg.ucsd.edu/universal/reactions/CYSTS CYSTS]
+
−
* [http://bigg.ucsd.edu/universal/reactions/DABAAT DABAAT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/DALAOX DALAOX]
+
−
* [http://bigg.ucsd.edu/universal/reactions/DALAOXx DALAOXx]
+
−
* [http://bigg.ucsd.edu/universal/reactions/DARGOp DARGOp]
+
−
* [http://bigg.ucsd.edu/universal/reactions/DDMCITALOR DDMCITALOR]
+
−
* [http://bigg.ucsd.edu/universal/reactions/DMCITALOR DMCITALOR]
+
−
* [http://bigg.ucsd.edu/universal/reactions/DORNOp DORNOp]
+
−
* [http://bigg.ucsd.edu/universal/reactions/DPROOp DPROOp]
+
−
* [http://bigg.ucsd.edu/universal/reactions/G3PL G3PL]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GCC2 GCC2]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GCC2am GCC2am]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GCC2bim GCC2bim]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GCC2cm GCC2cm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GCCa GCCa]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GCCam GCCam]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GCCb GCCb]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GCCbim GCCbim]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GCCc GCCc]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GCCcm GCCcm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GHMT2rm GHMT2rm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLYAT GLYAT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLYATm GLYATm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLYATx GLYATx]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLYCDH_1 GLYCDH_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLYCL GLYCL]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLYCL_2 GLYCL_2]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLYCLm GLYCLm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLYDHD GLYDHD]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLYOp GLYOp]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLYPT GLYPT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLYTA_1 GLYTA_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GNMT GNMT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HSDH HSDH]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HSDxi HSDxi]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HSK_1 HSK_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MAOLNOR MAOLNOR]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MTAM MTAM]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MTAM_nh4 MTAM_nh4]
+
−
* [http://bigg.ucsd.edu/universal/reactions/OHPBAT OHPBAT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PDHcr PDHcr]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PDHe3hr PDHe3hr]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PGLYDH PGLYDH]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PGMf PGMf]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PGMm PGMm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PSAT PSAT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PSERT PSERT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PSP PSP]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PSP_D PSP_D]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PSP_L PSP_L]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PSP_Lpp PSP_Lpp]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PSSA120 PSSA120]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PSSA160 PSSA160]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PSSA161 PSSA161]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PSSA180 PSSA180]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PSSA181 PSSA181]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PSSA_HP PSSA_HP]
+
−
* [http://bigg.ucsd.edu/universal/reactions/R01465m R01465m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SARCOX SARCOX]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SARCOXp SARCOXp]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SELCYSTGL SELCYSTGL]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SELCYSTS SELCYSTS]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SERH SERH]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SERHL SERHL]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SER_AL SER_AL]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SGAT SGAT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SPT_syn SPT_syn]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SPTc SPTc]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SPTix SPTix]
+
−
* [http://bigg.ucsd.edu/universal/reactions/TAL TAL]
+
−
* [http://bigg.ucsd.edu/universal/reactions/THFATm THFATm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/THRA THRA]
+
−
* [http://bigg.ucsd.edu/universal/reactions/THRAL THRAL]
+
−
* [http://bigg.ucsd.edu/universal/reactions/THRA_1 THRA_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/THRD THRD]
+
−
* [http://bigg.ucsd.edu/universal/reactions/THRD_Lm THRD_Lm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/THRS_1 THRS_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/TRPS1 TRPS1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/TRPS2 TRPS2]
+
−
* [http://bigg.ucsd.edu/universal/reactions/TRPS2h TRPS2h]
+
−
* [http://bigg.ucsd.edu/universal/reactions/TRPS3 TRPS3]
+
 
== External links  ==
 
== External links  ==
−
{{#set: common_name=Glycine, serine and threonine metabolism}}
+
{{#set: direction=REVERSIBLE}}
−
{{#set: reaction found=23}}
+
{{#set: in pathway=}}
−
{{#set: total reaction=133}}
+
{{#set: reconstruction category=manual}}
−
{{#set: completion rate=17.0}}
+
{{#set: reconstruction source=manual-import_from_medium}}
 +
{{#set: reconstruction comment=added to manage seeds from boundary to extracellular compartment}}

Latest revision as of 16:25, 21 March 2018

Reaction ExchangeSeed_ade

  • direction:
    • REVERSIBLE
  • Synonym(s):

Reaction Formula

  • With identifiers:
    • 1.0 ade[C-BOUNDARY] <=> 1.0 ade[e]
  • With common name(s):
    • 1.0 Adenine[C-BOUNDARY] <=> 1.0 Adenine[e]

Genes associated with this reaction

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/efaecV583/index.php?title=ExchangeSeed_ade&oldid=10102"