Difference between revisions of "ExchangeSeed orot"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/TRDR TRDR] == * direction: ** LEFT-TO-RIGHT * common name: ** Thioredoxin reductase (NADPH) * Synon...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/ExchangeSeed_orot ExchangeSeed_orot] == * direction: ** REVERSIBLE * Synonym(s): == Reaction Formu...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
== Reaction [http://bigg.ucsd.edu/universal/reactions/TRDR TRDR] ==
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== Reaction [http://bigg.ucsd.edu/universal/reactions/ExchangeSeed_orot ExchangeSeed_orot] ==
 
* direction:
 
* direction:
** LEFT-TO-RIGHT
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** REVERSIBLE
* common name:
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** Thioredoxin reductase (NADPH)
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* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
** 1.0 [[trdox]][c] '''+''' 1.0 [[h]][c] '''+''' 1.0 [[nadph]][c] '''=>''' 1.0 [[trdrd]][c] '''+''' 1.0 [[nadp]][c]
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** 1.0 [[orot]][C-BOUNDARY] '''<=>''' 1.0 [[orot]][e]
 
* With common name(s):
 
* With common name(s):
** 1.0 Oxidized thioredoxin[c] '''+''' 1.0 H+[c] '''+''' 1.0 Nicotinamide adenine dinucleotide phosphate - reduced[c] '''=>''' 1.0 Reduced thioredoxin[c] '''+''' 1.0 Nicotinamide adenine dinucleotide phosphate[c]
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** 1.0 Orotate C5H3N2O4[C-BOUNDARY] '''<=>''' 1.0 Orotate C5H3N2O4[e]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
Genes have been associated with this reaction based on different elements listed below.
 
* [[EF1405]]
 
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 
* [[EF2899]]
 
** [[pantograph]]-[[l_plantarum_wcfs1]]
 
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 
* [[EF1338]]
 
** [[pantograph]]-[[l_plantarum_wcfs1]]
 
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 
 
== Pathways  ==
 
== Pathways  ==
* [[map00450]]: [http://www.genome.jp/dbget-bin/www_bget?map00450 map00450]
 
** '''6''' reactions found over '''35''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* Category: [[orthology]]
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* Category: [[manual]]
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
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** Source: [[manual-import_from_medium]]
*** Tool: [[pantograph]]
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*** Comment: [[added to manage seeds from boundary to extracellular compartment]]
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-l_plantarum_wcfs1]]
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*** Tool: [[pantograph]]
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== External links  ==
 
== External links  ==
* BioCyc : META:THIOREDOXIN-REDUCT-NADPH-RXN
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{{#set: direction=REVERSIBLE}}
* MetaNetX (MNX) Equation : MNXR104766
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{{#set: in pathway=}}
* KEGG Reaction : R02016
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{{#set: reconstruction category=manual}}
* EC Number : 1.6.4.5
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{{#set: reconstruction source=manual-import_from_medium}}
{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reconstruction comment=added to manage seeds from boundary to extracellular compartment}}
{{#set: common name=Thioredoxin reductase (NADPH)}}
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{{#set: gene associated=EF1405|EF2899|EF1338}}
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{{#set: in pathway=map00450}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168|orthology-l_plantarum_wcfs1}}
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{{#set: reconstruction tool=pantograph}}
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Latest revision as of 16:34, 21 March 2018

Reaction ExchangeSeed_orot

  • direction:
    • REVERSIBLE
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Orotate C5H3N2O4[C-BOUNDARY] <=> 1.0 Orotate C5H3N2O4[e]

Genes associated with this reaction

Pathways

Reconstruction information

External links