Difference between revisions of "ExchangeSeed pi"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/TMN TMN] == * direction: ** LEFT-TO-RIGHT * common name: ** Thiaminase * Synonym(s): == Reaction F...")
(Created page with "Category:Pathway == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00380 map00380] == * common_name: ** Tryptophan metabolism * Synonym(s): == Reaction(s) found ==...")
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Pathway]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/TMN TMN] ==
+
== Pathway [http://www.genome.jp/dbget-bin/www_bget?map00380 map00380] ==
−
* direction:
+
* common_name:
−
** LEFT-TO-RIGHT
+
** Tryptophan metabolism
−
* common name:
+
−
** Thiaminase
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reaction(s) found ==
−
* With identifiers:
+
'''7''' reactions found over '''163''' reactions in the full pathway
−
** 1.0 [[thm]][c] '''+''' 1.0 [[h2o]][c] '''=>''' 1.0 [[4ahmmp]][c] '''+''' 1.0 [[4mhetz]][c] '''+''' 1.0 [[h]][c]
+
* [[ABUTD]]
−
* With common name(s):
+
** 1 associated gene(s):
−
** 1.0 Thiamin[c] '''+''' 1.0 H2O H2O[c] '''=>''' 1.0 4-Amino-5-hydroxymethyl-2-methylpyrimidine[c] '''+''' 1.0 4-Methyl-5-(2-hydroxyethyl)-thiazole[c] '''+''' 1.0 H+[c]
+
*** [[EF0253]]
−
 
+
** 1 reconstruction source(s) associated:
−
== Genes associated with this reaction  ==
+
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
−
Genes have been associated with this reaction based on different elements listed below.
+
* [[ACACT1r]]
−
* [[EF2767]]
+
** 1 associated gene(s):
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
+
*** [[EF1364]]
−
== Pathways  ==
+
** 2 reconstruction source(s) associated:
−
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
+
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
** '''460''' reactions found over '''2349''' reactions in the full pathway
+
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
−
* [[map00730]]: [http://www.genome.jp/dbget-bin/www_bget?map00730 map00730]
+
* [[ASPO1]]
−
** '''11''' reactions found over '''24''' reactions in the full pathway
+
** 1 associated gene(s):
−
== Reconstruction information  ==
+
*** [[EF2556]]
−
* [[orthology]]:
+
** 1 reconstruction source(s) associated:
−
** [[pantograph]]:
+
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
−
*** [[b_subtilis_subsp_subtilis_str168]]
+
* [[CAT]]
 +
** 1 associated gene(s):
 +
*** [[EF1597]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[GLYALDDr]]
 +
** 1 associated gene(s):
 +
*** [[EF0253]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
* [[TRPTA]]
 +
** 1 associated gene(s):
 +
*** [[EF1706]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[TYRCBOX]]
 +
** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
 +
== Reaction(s) not found ==
 +
* [http://bigg.ucsd.edu/universal/reactions/2OXOADOXm 2OXOADOXm]
 +
* [http://bigg.ucsd.edu/universal/reactions/3HAO 3HAO]
 +
* [http://bigg.ucsd.edu/universal/reactions/3HKYNAKGAT 3HKYNAKGAT]
 +
* [http://bigg.ucsd.edu/universal/reactions/3HLYTCL 3HLYTCL]
 +
* [http://bigg.ucsd.edu/universal/reactions/3HOPCD 3HOPCD]
 +
* [http://bigg.ucsd.edu/universal/reactions/3HXKYNDCL 3HXKYNDCL]
 +
* [http://bigg.ucsd.edu/universal/reactions/3HXKYNOXDA 3HXKYNOXDA]
 +
* [http://bigg.ucsd.edu/universal/reactions/3MOXTYROX 3MOXTYROX]
 +
* [http://bigg.ucsd.edu/universal/reactions/41R1H2MAE12BOOX 41R1H2MAE12BOOX]
 +
* [http://bigg.ucsd.edu/universal/reactions/41R2A1H12BOOX 41R2A1H12BOOX]
 +
* [http://bigg.ucsd.edu/universal/reactions/4ABUTD 4ABUTD]
 +
* [http://bigg.ucsd.edu/universal/reactions/5HLTDL 5HLTDL]
 +
* [http://bigg.ucsd.edu/universal/reactions/5HOXINDACTO2OX 5HOXINDACTO2OX]
 +
* [http://bigg.ucsd.edu/universal/reactions/5HOXINDACTOX 5HOXINDACTOX]
 +
* [http://bigg.ucsd.edu/universal/reactions/5HOXINDACTOXm 5HOXINDACTOXm]
 +
* [http://bigg.ucsd.edu/universal/reactions/5HOXINOXDA 5HOXINOXDA]
 +
* [http://bigg.ucsd.edu/universal/reactions/5HTRPDOX 5HTRPDOX]
 +
* [http://bigg.ucsd.edu/universal/reactions/5HXKYNDCL 5HXKYNDCL]
 +
* [http://bigg.ucsd.edu/universal/reactions/5HXKYNOXDA 5HXKYNOXDA]
 +
* [http://bigg.ucsd.edu/universal/reactions/ABOR ABOR]
 +
* [http://bigg.ucsd.edu/universal/reactions/ABUTDm ABUTDm]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT10m ACACT10m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT1m ACACT1m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT1x ACACT1x]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT2 ACACT2]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT2m ACACT2m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT2r ACACT2r]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT3 ACACT3]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT3m ACACT3m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT3r ACACT3r]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT4m ACACT4m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT4p ACACT4p]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT4r ACACT4r]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT5m ACACT5m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT5p ACACT5p]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT5r ACACT5r]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT6m ACACT6m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT6p ACACT6p]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT6r ACACT6r]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT7m ACACT7m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT7p ACACT7p]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT7r ACACT7r]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACSOMT ACSOMT]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACSRTNMT ACSRTNMT]
 +
* [http://bigg.ucsd.edu/universal/reactions/AKGDa AKGDa]
 +
* [http://bigg.ucsd.edu/universal/reactions/AKGDam AKGDam]
 +
* [http://bigg.ucsd.edu/universal/reactions/ALCD26xi ALCD26xi]
 +
* [http://bigg.ucsd.edu/universal/reactions/ALCD26xim ALCD26xim]
 +
* [http://bigg.ucsd.edu/universal/reactions/ALDD20x ALDD20x]
 +
* [http://bigg.ucsd.edu/universal/reactions/ALDD20xm ALDD20xm]
 +
* [http://bigg.ucsd.edu/universal/reactions/ALDH ALDH]
 +
* [http://bigg.ucsd.edu/universal/reactions/AM6SAD AM6SAD]
 +
* [http://bigg.ucsd.edu/universal/reactions/AMID AMID]
 +
* [http://bigg.ucsd.edu/universal/reactions/AMID2 AMID2]
 +
* [http://bigg.ucsd.edu/universal/reactions/AMID3 AMID3]
 +
* [http://bigg.ucsd.edu/universal/reactions/AMID4 AMID4]
 +
* [http://bigg.ucsd.edu/universal/reactions/AMID5 AMID5]
 +
* [http://bigg.ucsd.edu/universal/reactions/AMID_1 AMID_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/APRTO2 APRTO2]
 +
* [http://bigg.ucsd.edu/universal/reactions/ASPOm ASPOm]
 +
* [http://bigg.ucsd.edu/universal/reactions/C2M26DCOAHLm C2M26DCOAHLm]
 +
* [http://bigg.ucsd.edu/universal/reactions/C2M26DCOAHLx C2M26DCOAHLx]
 +
* [http://bigg.ucsd.edu/universal/reactions/CAT2p CAT2p]
 +
* [http://bigg.ucsd.edu/universal/reactions/CATm CATm]
 +
* [http://bigg.ucsd.edu/universal/reactions/CATp CATp]
 +
* [http://bigg.ucsd.edu/universal/reactions/CITALALDOR CITALALDOR]
 +
* [http://bigg.ucsd.edu/universal/reactions/DDMCITALOR DDMCITALOR]
 +
* [http://bigg.ucsd.edu/universal/reactions/DHACOAH DHACOAH]
 +
* [http://bigg.ucsd.edu/universal/reactions/DMCITALOR DMCITALOR]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECH_3hivcoa ECH_3hivcoa]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH1 ECOAH1]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH11p ECOAH11p]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH12 ECOAH12]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH12m ECOAH12m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH1_1 ECOAH1_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH1m ECOAH1m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH1x ECOAH1x]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH9ir ECOAH9ir]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH9m ECOAH9m]
 +
* [http://bigg.ucsd.edu/universal/reactions/FKYNH FKYNH]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLACO GLACO]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLACOm GLACOm]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD1 HACD1]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD10p HACD10p]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD1_1 HACD1_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD1i HACD1i]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD1m HACD1m]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD1x HACD1x]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD2 HACD2]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD2_1 HACD2_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD2i HACD2i]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD2m HACD2m]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD3 HACD3]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD3_1 HACD3_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD3i HACD3i]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD3m HACD3m]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD4 HACD4]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD4i HACD4i]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD4m HACD4m]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD4p HACD4p]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD5 HACD5]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD5i HACD5i]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD5m HACD5m]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD5p HACD5p]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD6 HACD6]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD6i HACD6i]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD6m HACD6m]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD6p HACD6p]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD7 HACD7]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD7i HACD7i]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD7m HACD7m]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD7p HACD7p]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD9 HACD9]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD9m HACD9m]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACDp HACDp]
 +
* [http://bigg.ucsd.edu/universal/reactions/HADPCOADH3 HADPCOADH3]
 +
* [http://bigg.ucsd.edu/universal/reactions/HBCO_nadp HBCO_nadp]
 +
* [http://bigg.ucsd.edu/universal/reactions/HBCO_nadp_m HBCO_nadp_m]
 +
* [http://bigg.ucsd.edu/universal/reactions/HDC HDC]
 +
* [http://bigg.ucsd.edu/universal/reactions/HIBDkt HIBDkt]
 +
* [http://bigg.ucsd.edu/universal/reactions/HISDC HISDC]
 +
* [http://bigg.ucsd.edu/universal/reactions/HKYNH HKYNH]
 +
* [http://bigg.ucsd.edu/universal/reactions/HMNO HMNO]
 +
* [http://bigg.ucsd.edu/universal/reactions/IMACTD IMACTD]
 +
* [http://bigg.ucsd.edu/universal/reactions/IMACTD_m IMACTD_m]
 +
* [http://bigg.ucsd.edu/universal/reactions/INDPYRD INDPYRD]
 +
* [http://bigg.ucsd.edu/universal/reactions/KAT1 KAT1]
 +
* [http://bigg.ucsd.edu/universal/reactions/KYN KYN]
 +
* [http://bigg.ucsd.edu/universal/reactions/KYN3OX KYN3OX]
 +
* [http://bigg.ucsd.edu/universal/reactions/KYNAKGAT KYNAKGAT]
 +
* [http://bigg.ucsd.edu/universal/reactions/LFORKYNHYD LFORKYNHYD]
 +
* [http://bigg.ucsd.edu/universal/reactions/LIDOMO LIDOMO]
 +
* [http://bigg.ucsd.edu/universal/reactions/LTDCL LTDCL]
 +
* [http://bigg.ucsd.edu/universal/reactions/MACCOAT MACCOAT]
 +
* [http://bigg.ucsd.edu/universal/reactions/MAOLNOR MAOLNOR]
 +
* [http://bigg.ucsd.edu/universal/reactions/MELATN23DOX MELATN23DOX]
 +
* [http://bigg.ucsd.edu/universal/reactions/NABTNO NABTNO]
 +
* [http://bigg.ucsd.edu/universal/reactions/NABTNOm NABTNOm]
 +
* [http://bigg.ucsd.edu/universal/reactions/NTRLASE NTRLASE]
 +
* [http://bigg.ucsd.edu/universal/reactions/NTRLASE2 NTRLASE2]
 +
* [http://bigg.ucsd.edu/universal/reactions/NTRLASE3 NTRLASE3]
 +
* [http://bigg.ucsd.edu/universal/reactions/OXOADLR OXOADLR]
 +
* [http://bigg.ucsd.edu/universal/reactions/P4503A43r P4503A43r]
 +
* [http://bigg.ucsd.edu/universal/reactions/PCLAD PCLAD]
 +
* [http://bigg.ucsd.edu/universal/reactions/PPYRDC PPYRDC]
 +
* [http://bigg.ucsd.edu/universal/reactions/PYLALDOX PYLALDOX]
 +
* [http://bigg.ucsd.edu/universal/reactions/PYLALDOXm PYLALDOXm]
 +
* [http://bigg.ucsd.edu/universal/reactions/QUILSYN QUILSYN]
 +
* [http://bigg.ucsd.edu/universal/reactions/RAHY RAHY]
 +
* [http://bigg.ucsd.edu/universal/reactions/SRTN23OX SRTN23OX]
 +
* [http://bigg.ucsd.edu/universal/reactions/SRTNACT SRTNACT]
 +
* [http://bigg.ucsd.edu/universal/reactions/SRTNMTX SRTNMTX]
 +
* [http://bigg.ucsd.edu/universal/reactions/T2M26DCOAHLm T2M26DCOAHLm]
 +
* [http://bigg.ucsd.edu/universal/reactions/T2M26DCOAHLx T2M26DCOAHLx]
 +
* [http://bigg.ucsd.edu/universal/reactions/TRPAS2 TRPAS2]
 +
* [http://bigg.ucsd.edu/universal/reactions/TRPO2 TRPO2]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: common_name=Tryptophan metabolism}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17509 17509]
+
{{#set: reaction found=7}}
−
* BioCyc : META:THIAMINASE-RXN
+
{{#set: total reaction=163}}
−
* MetaNetX (MNX) Equation : MNXR104901
+
{{#set: completion rate=4.0}}
−
* KEGG Reaction : R02133
+
−
* EC Number : 3.5.99.2
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=Thiaminase}}
+
−
{{#set: gene associated=EF2767}}
+
−
{{#set: in pathway=map01100|map00730}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=b_subtilis_subsp_subtilis_str168}}
+

Revision as of 19:27, 18 March 2018

Pathway map00380

  • common_name:
    • Tryptophan metabolism
  • Synonym(s):

Reaction(s) found

7 reactions found over 163 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/efaecV583/index.php?title=ExchangeSeed_pi&oldid=7262"