Difference between revisions of "GARFT"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PAPPT5 PAPPT5] == * direction: ** LEFT-TO-RIGHT * common name: ** phospho N acetylmuramoyl pentapep...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/GARFT GARFT] == * direction: ** REVERSIBLE * common name: ** Phosphoribosylglycinamide formyltransf...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/PAPPT5 PAPPT5] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/GARFT GARFT] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** phospho N acetylmuramoyl pentapeptide transferase meso 2 6 diaminopimelate
+
** Phosphoribosylglycinamide formyltransferase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[ugmdalac]][c] '''+''' 1.0 [[udcpp]][c] '''=>''' 1.0 [[uagmdalac]][c] '''+''' 1.0 [[ump]][c]
+
** 1.0 [[gar]][c] '''+''' 1.0 [[10fthf]][c] '''<=>''' 1.0 [[h]][c] '''+''' 1.0 [[thf]][c] '''+''' 1.0 [[fgam]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 UDP_N_acetylmuramoyl_L_alanyl_D_glutamyl_meso_2_6_diaminopimeloyl_D_alanyl_D_lactate[c] '''+''' 1.0 Undecaprenyl phosphate[c] '''=>''' 1.0 Undecaprenyl_diphospho_N_acetylmuramoyl_L_alanyl_D_glutamyl_meso_2_6_diaminopimeloyl_D_alanyl_D_lactate[c] '''+''' 1.0 UMP C9H11N2O9P[c]
+
** 1.0 N1-(5-Phospho-D-ribosyl)glycinamide[c] '''+''' 1.0 10-Formyltetrahydrofolate[c] '''<=>''' 1.0 H+[c] '''+''' 1.0 5,6,7,8-Tetrahydrofolate[c] '''+''' 1.0 N2-Formyl-N1-(5-phospho-D-ribosyl)glycinamide[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF0992]]
+
* Gene: [[EF1779]]
−
** [[pantograph]]-[[l_plantarum_wcfs1]]
+
** Source: [[orthology-l_plantarum_wcfs1]]
 +
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 +
** '''460''' reactions found over '''2349''' reactions in the full pathway
 +
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 +
** '''135''' reactions found over '''694''' reactions in the full pathway
 +
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 +
** '''179''' reactions found over '''1054''' reactions in the full pathway
 +
* [[map00670]]: [http://www.genome.jp/dbget-bin/www_bget?map00670 map00670]
 +
** '''14''' reactions found over '''65''' reactions in the full pathway
 +
* [[map00230]]: [http://www.genome.jp/dbget-bin/www_bget?map00230 map00230]
 +
** '''97''' reactions found over '''298''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
*** [[l_plantarum_wcfs1]]
+
*** Tool: [[pantograph]]
−
* [[manual]]:
+
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
−
** [[curation_from_orthology]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
{{#set: direction=LEFT-TO-RIGHT}}
+
* RHEA:
−
{{#set: common name=phospho N acetylmuramoyl pentapeptide transferase meso 2 6 diaminopimelate }}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15053 15053]
−
{{#set: gene associated=EF0992}}
+
* MetaNetX (MNX) Equation : MNXR99623
−
{{#set: in pathway=}}
+
* KEGG Reaction : R04325
 +
* EC Number : 2.1.2.2
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=Phosphoribosylglycinamide formyltransferase}}
 +
{{#set: gene associated=EF1779}}
 +
{{#set: in pathway=map01100|map01130|map01110|map00670|map00230}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168|orthology-l_plantarum_wcfs1}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=l_plantarum_wcfs1}}
 
−
{{#set: reconstruction category=manual}}
 
−
{{#set: reconstruction source=curation_from_orthology}}
 

Latest revision as of 16:20, 21 March 2018

Reaction GARFT

  • direction:
    • REVERSIBLE
  • common name:
    • Phosphoribosylglycinamide formyltransferase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 N1-(5-Phospho-D-ribosyl)glycinamide[c] + 1.0 10-Formyltetrahydrofolate[c] <=> 1.0 H+[c] + 1.0 5,6,7,8-Tetrahydrofolate[c] + 1.0 N2-Formyl-N1-(5-phospho-D-ribosyl)glycinamide[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • MetaNetX (MNX) Equation : MNXR99623
  • KEGG Reaction : R04325
  • EC Number : 2.1.2.2




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