Difference between revisions of "GLUDy"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/GLYO1 GLYO1] == * direction: ** LEFT-TO-RIGHT * common name: ** Glycine oxidase * Synonym(s): == R...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/GLUDy GLUDy] == * direction: ** REVERSIBLE * common name: ** Glutamate dehydrogenase (NADP) * Synon...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/GLYO1 GLYO1] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/GLUDy GLUDy] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** Glycine oxidase
+
** Glutamate dehydrogenase (NADP)
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[gly]][c] '''+''' 1.0 [[o2]][c] '''+''' 1.0 [[h2o]][c] '''=>''' 1.0 [[glx]][c] '''+''' 1.0 [[nh4]][c] '''+''' 1.0 [[h2o2]][c]
+
** 1.0 [[nadp]][c] '''+''' 1.0 [[glu__L]][c] '''+''' 1.0 [[h2o]][c] '''<=>''' 1.0 [[nh4]][c] '''+''' 1.0 [[nadph]][c] '''+''' 1.0 [[akg]][c] '''+''' 1.0 [[h]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 Glycine[c] '''+''' 1.0 O2 O2[c] '''+''' 1.0 H2O H2O[c] '''=>''' 1.0 Glyoxylate[c] '''+''' 1.0 Ammonium[c] '''+''' 1.0 Hydrogen peroxide[c]
+
** 1.0 Nicotinamide adenine dinucleotide phosphate[c] '''+''' 1.0 L-Glutamate[c] '''+''' 1.0 H2O H2O[c] '''<=>''' 1.0 Ammonium[c] '''+''' 1.0 Nicotinamide adenine dinucleotide phosphate - reduced[c] '''+''' 1.0 2-Oxoglutarate[c] '''+''' 1.0 H+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[EF1415]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 +
** '''460''' reactions found over '''2349''' reactions in the full pathway
 +
* [[map00220]]: [http://www.genome.jp/dbget-bin/www_bget?map00220 map00220]
 +
** '''9''' reactions found over '''65''' reactions in the full pathway
 +
* [[map00250]]: [http://www.genome.jp/dbget-bin/www_bget?map00250 map00250]
 +
** '''22''' reactions found over '''93''' reactions in the full pathway
 +
* [[map00910]]: [http://www.genome.jp/dbget-bin/www_bget?map00910 map00910]
 +
** '''5''' reactions found over '''36''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[gap-filling]]
+
* Category: [[orthology]]
−
** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
*** Tool: [[meneco]]
+
*** Tool: [[pantograph]]
−
**** Comment: [[added for gapfilling]]
+
** Source: [[orthology-l_plantarum_wcfs1]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
* EC Number : 1.4.3.19
 
−
* BioCyc : META:1.4.3.19-RXN
 
−
* MetaNetX (MNX) Equation : MNXR100352
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11532 11532]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11612 11612]
−
* Reactome : REACT_R-BTA-389821
+
* BioCyc : META:GLUTDEHYD-RXN
−
* KEGG Reaction : R00366
+
* MetaNetX (MNX) Equation : MNXR100086
−
{{#set: direction=LEFT-TO-RIGHT}}
+
* KEGG Reaction : R00248
−
{{#set: common name=Glycine oxidase}}
+
* EC Number : 1.4.1.13
−
{{#set: in pathway=}}
+
{{#set: direction=REVERSIBLE}}
−
{{#set: reconstruction category=gap-filling}}
+
{{#set: common name=Glutamate dehydrogenase (NADP)}}
−
{{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium}}
+
{{#set: gene associated=EF1415}}
−
{{#set: reconstruction tool=meneco}}
+
{{#set: in pathway=map01100|map00220|map00250|map00910}}
−
{{#set: reconstruction comment=added for gapfilling}}
+
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-l_plantarum_wcfs1}}
 +
{{#set: reconstruction tool=pantograph}}

Latest revision as of 16:41, 21 March 2018

Reaction GLUDy

  • direction:
    • REVERSIBLE
  • common name:
    • Glutamate dehydrogenase (NADP)
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Nicotinamide adenine dinucleotide phosphate[c] + 1.0 L-Glutamate[c] + 1.0 H2O H2O[c] <=> 1.0 Ammonium[c] + 1.0 Nicotinamide adenine dinucleotide phosphate - reduced[c] + 1.0 2-Oxoglutarate[c] + 1.0 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:GLUTDEHYD-RXN
  • MetaNetX (MNX) Equation : MNXR100086
  • KEGG Reaction : R00248
  • EC Number : 1.4.1.13




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