Difference between revisions of "LTAS LPL"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/LTAS_LPL LTAS_LPL] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula == * With id...")
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
−
== EFAEV583GEM description ==
+
[[Category:Reaction]]
−
== Automatic reconstruction with [http://aureme.genouest.org AuReMe] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/LTAS_LPL LTAS_LPL] ==
−
The automatic reconstruction of ''Enterococcus_faecalis_str_v583'' results to a Genome scale Model containing 1187 reactions, 941 metabolites, 610 genes and 107 pathways. This GeM was obtained based on the following sources:
+
* direction:
−
* Based on orthology data:
+
** LEFT-TO-RIGHT
−
** Tool: [http://pathtastic.gforge.inria.fr Pantograph]
+
* Synonym(s):
−
*** From template ''E_COLI_SSTR_K12_SUBSTR_MG1655'' creation of a metabolic network containing: 528 reactions
+
−
*** From template ''L_PLANTARUM_WCFS1'' creation of a metabolic network containing: 385 reactions
+
−
*** From template ''B_SUBTILIS_SUBSP_SUBTILIS_STR168'' creation of a metabolic network containing: 463 reactions
+
−
* Based on expertise:
+
−
*** 221 reaction(s) added
+
−
* Based on gap-filling:
+
−
** Tool: [https://pypi.python.org/pypi/meneco meneco]
+
−
*** 120 reaction(s) added
+
  
−
[[FILE:venn.png|frameless|border]]
+
== Reaction Formula ==
 +
* With identifiers:
 +
** 0.25 [[pg_LPL]][c] '''+''' 0.01 [[dgdag_LPL]][c] '''=>''' 0.01 [[LTA_LPL]][c] '''+''' 0.25 [[dag_LPL]][c]
 +
* With common name(s):
 +
** 0.25 Phospatidylglycerol__LPL_specific_[c] '''+''' 0.01 Diglucosyl_diacylglycerol[c] '''=>''' 0.01 lipoteichoic_acid__n25__LPL_specific_[c] '''+''' 0.25 1_2_Diacylglycerol__LPL_specific[c]
  
−
== Collaborative curation ==  
+
== Genes associated with this reaction  ==
−
* Suggest reactions to add or remove:
+
== Pathways  ==
−
** Download this [[MEDIA:Add_delete_reaction.csv|from]]
+
== Reconstruction information  ==
−
* Suggest new reactions to create and add:
+
* Category: [[manual]]
−
** Download this [[MEDIA:Reaction_creator.csv|form]]
+
** Source: [[manual-1_new_rxn_for_biomass]]
−
* '''Follow the examples given in the form to correctly share your suggestions'''
+
*** Comment: [[reaction added for biomass, from model l.plantarum]]
−
* Send the completed form(s) to: CONTACT_MAIL
+
== External links  ==
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: in pathway=}}
 +
{{#set: reconstruction category=manual}}
 +
{{#set: reconstruction source=manual-1_new_rxn_for_biomass}}
 +
{{#set: reconstruction comment=reaction added for biomass, from model l.plantarum}}

Latest revision as of 16:05, 21 March 2018

Reaction LTAS_LPL

  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 0.25 Phospatidylglycerol__LPL_specific_[c] + 0.01 Diglucosyl_diacylglycerol[c] => 0.01 lipoteichoic_acid__n25__LPL_specific_[c] + 0.25 1_2_Diacylglycerol__LPL_specific[c]

Genes associated with this reaction

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/efaecV583/index.php?title=LTAS_LPL&oldid=8476"