Difference between revisions of "LYSTRS"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PYDXS PYDXS] == * direction: ** LEFT-TO-RIGHT * common name: ** Pyridoxal 5-phosphate synthase * Sy...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/LYSTRS LYSTRS] == * direction: ** LEFT-TO-RIGHT * common name: ** Lysyl-tRNA synthetase * Synonym(s...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/PYDXS PYDXS] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/LYSTRS LYSTRS] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Pyridoxal 5-phosphate synthase
+
** Lysyl-tRNA synthetase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[g3p]][c] '''+''' 1.0 [[gln__L]][c] '''+''' 1.0 [[ru5p__D]][c] '''=>''' 1.0 [[pydx5p]][c] '''+''' 1.0 [[glu__L]][c] '''+''' 1.0 [[pi]][c] '''+''' 1.0 [[h]][c] '''+''' 3.0 [[h2o]][c]
+
** 1.0 [[trnalys]][c] '''+''' 1.0 [[atp]][c] '''+''' 1.0 [[lys__L]][c] '''=>''' 1.0 [[amp]][c] '''+''' 1.0 [[lystrna]][c] '''+''' 1.0 [[ppi]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 Glyceraldehyde 3-phosphate[c] '''+''' 1.0 L-Glutamine[c] '''+''' 1.0 D-Ribulose 5-phosphate[c] '''=>''' 1.0 Pyridoxal 5'-phosphate[c] '''+''' 1.0 L-Glutamate[c] '''+''' 1.0 Phosphate[c] '''+''' 1.0 H+[c] '''+''' 3.0 H2O H2O[c]
+
** 1.0 TRNA(Lys)[c] '''+''' 1.0 ATP C10H12N5O13P3[c] '''+''' 1.0 L-Lysine[c] '''=>''' 1.0 AMP C10H12N5O7P[c] '''+''' 1.0 L-Lysine-tRNA (Lys)[c] '''+''' 1.0 Diphosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[EF0268]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[map00750]]: [http://www.genome.jp/dbget-bin/www_bget?map00750 map00750]
+
* [[map00970]]: [http://www.genome.jp/dbget-bin/www_bget?map00970 map00970]
−
** '''4''' reactions found over '''25''' reactions in the full pathway
+
** '''23''' reactions found over '''49''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[gap-filling]]:
+
* Category: [[orthology]]
−
** [[meneco]]:
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
*** [[added for gapfilling]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
* MetaNetX (MNX) Equation : MNXR103369
+
* Reactome : REACT_R-HSA-380008
−
* KEGG Reaction : R07456
+
* MetaNetX (MNX) Equation : MNXR101264
−
* EC Number : 4.3.3.6
+
* KEGG Reaction : R03658
 +
* EC Number : 6.1.1.6
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Pyridoxal 5-phosphate synthase}}
+
{{#set: common name=Lysyl-tRNA synthetase}}
−
{{#set: in pathway=map00750}}
+
{{#set: gene associated=EF0268}}
−
{{#set: reconstruction category=gap-filling}}
+
{{#set: in pathway=map00970}}
−
{{#set: reconstruction tool=meneco}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction source=added for gapfilling}}
+
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-l_plantarum_wcfs1}}
 +
{{#set: reconstruction tool=pantograph}}

Latest revision as of 16:42, 21 March 2018

Reaction LYSTRS

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Lysyl-tRNA synthetase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 TRNA(Lys)[c] + 1.0 ATP C10H12N5O13P3[c] + 1.0 L-Lysine[c] => 1.0 AMP C10H12N5O7P[c] + 1.0 L-Lysine-tRNA (Lys)[c] + 1.0 Diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • Reactome : REACT_R-HSA-380008
  • MetaNetX (MNX) Equation : MNXR101264
  • KEGG Reaction : R03658
  • EC Number : 6.1.1.6




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