Difference between revisions of "LYSTRS"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/ILETA ILETA] == * direction: ** REVERSIBLE * common name: ** Isoleucine transaminase * Synonym(s):...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/LYSTRS LYSTRS] == * direction: ** LEFT-TO-RIGHT * common name: ** Lysyl-tRNA synthetase * Synonym(s...")
 
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/ILETA ILETA] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/LYSTRS LYSTRS] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Isoleucine transaminase
+
** Lysyl-tRNA synthetase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[akg]][c] '''+''' 1.0 [[ile__L]][c] '''<=>''' 1.0 [[glu__L]][c] '''+''' 1.0 [[3mop]][c]
+
** 1.0 [[trnalys]][c] '''+''' 1.0 [[atp]][c] '''+''' 1.0 [[lys__L]][c] '''=>''' 1.0 [[amp]][c] '''+''' 1.0 [[lystrna]][c] '''+''' 1.0 [[ppi]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 2-Oxoglutarate[c] '''+''' 1.0 L-Isoleucine[c] '''<=>''' 1.0 L-Glutamate[c] '''+''' 1.0 (S)-3-Methyl-2-oxopentanoate[c]
+
** 1.0 TRNA(Lys)[c] '''+''' 1.0 ATP C10H12N5O13P3[c] '''+''' 1.0 L-Lysine[c] '''=>''' 1.0 AMP C10H12N5O7P[c] '''+''' 1.0 L-Lysine-tRNA (Lys)[c] '''+''' 1.0 Diphosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF1793]]
+
* Gene: [[EF0268]]
−
** [[pantograph]]-[[l_plantarum_wcfs1]]
+
** Source: [[orthology-l_plantarum_wcfs1]]
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
+
* [[map00970]]: [http://www.genome.jp/dbget-bin/www_bget?map00970 map00970]
−
** '''460''' reactions found over '''2349''' reactions in the full pathway
+
** '''23''' reactions found over '''49''' reactions in the full pathway
−
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
+
−
** '''179''' reactions found over '''1054''' reactions in the full pathway
+
−
* [[map00770]]: [http://www.genome.jp/dbget-bin/www_bget?map00770 map00770]
+
−
** '''17''' reactions found over '''75''' reactions in the full pathway
+
−
* [[map00280]]: [http://www.genome.jp/dbget-bin/www_bget?map00280 map00280]
+
−
** '''9''' reactions found over '''155''' reactions in the full pathway
+
−
* [[map00290]]: [http://www.genome.jp/dbget-bin/www_bget?map00290 map00290]
+
−
** '''9''' reactions found over '''49''' reactions in the full pathway
+
−
* [[map01210]]: [http://www.genome.jp/dbget-bin/www_bget?map01210 map01210]
+
−
** '''14''' reactions found over '''80''' reactions in the full pathway
+
−
* [[map00270]]: [http://www.genome.jp/dbget-bin/www_bget?map00270 map00270]
+
−
** '''25''' reactions found over '''135''' reactions in the full pathway
+
−
* [[map01230]]: [http://www.genome.jp/dbget-bin/www_bget?map01230 map01230]
+
−
** '''56''' reactions found over '''228''' reactions in the full pathway
+
−
* [[map00966]]: [http://www.genome.jp/dbget-bin/www_bget?map00966 map00966]
+
−
** '''4''' reactions found over '''10''' reactions in the full pathway
+
−
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
+
−
** '''135''' reactions found over '''694''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
 
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
** Source: [[orthology-l_plantarum_wcfs1]]
 
** Source: [[orthology-l_plantarum_wcfs1]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* Reactome : REACT_R-HSA-380008
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24801 24801]
+
* MetaNetX (MNX) Equation : MNXR101264
−
* BioCyc : META:BRANCHED-CHAINAMINOTRANSFERILEU-RXN
+
* KEGG Reaction : R03658
−
* MetaNetX (MNX) Equation : MNXR96228
+
* EC Number : 6.1.1.6
−
* KEGG Reaction : R02199
+
{{#set: direction=LEFT-TO-RIGHT}}
−
* EC Number : 2.6.1.42
+
{{#set: common name=Lysyl-tRNA synthetase}}
−
{{#set: direction=REVERSIBLE}}
+
{{#set: gene associated=EF0268}}
−
{{#set: common name=Isoleucine transaminase}}
+
{{#set: in pathway=map00970}}
−
{{#set: gene associated=EF1793}}
+
−
{{#set: in pathway=map01100|map01110|map00770|map00280|map00290|map01210|map00270|map01230|map00966|map01130}}
+
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168|orthology-l_plantarum_wcfs1}}
+
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-l_plantarum_wcfs1}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}

Latest revision as of 16:42, 21 March 2018

Reaction LYSTRS

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Lysyl-tRNA synthetase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 TRNA(Lys)[c] + 1.0 ATP C10H12N5O13P3[c] + 1.0 L-Lysine[c] => 1.0 AMP C10H12N5O7P[c] + 1.0 L-Lysine-tRNA (Lys)[c] + 1.0 Diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • Reactome : REACT_R-HSA-380008
  • MetaNetX (MNX) Equation : MNXR101264
  • KEGG Reaction : R03658
  • EC Number : 6.1.1.6




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