Difference between revisions of "MCMAT4 manual"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/3OAS60 3OAS60] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-oxoacyl-[acyl-carrier-protein]...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/MCMAT4_manual MCMAT4_manual] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula ==...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
== Reaction [http://bigg.ucsd.edu/universal/reactions/3OAS60 3OAS60] ==
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== Reaction [http://bigg.ucsd.edu/universal/reactions/MCMAT4_manual MCMAT4_manual] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
* common name:
 
** 3-oxoacyl-[acyl-carrier-protein] synthase (n-C6:0)
 
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
** 1.0 [[butACP]][c] '''+''' 1.0 [[malACP]][c] '''+''' 1.0 [[h]][c] '''=>''' 1.0 [[3ohexACP]][c] '''+''' 1.0 [[co2]][c] '''+''' 1.0 [[ACP]][c]
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** 1.0 [[octACP]][c] '''+''' 1.0 [[malACP]][c] '''+''' 1.0 [[h]][c] '''=>''' 1.0 [[ACP]][c] '''+''' 1.0 [[3odecACP]][c] '''+''' 1.0 [[co2]][c]
 
* With common name(s):
 
* With common name(s):
** 1.0 Butyryl-ACP (n-C4:0ACP)[c] '''+''' 1.0 Malonyl-[acyl-carrier protein][c] '''+''' 1.0 H+[c] '''=>''' 1.0 3-Oxohexanoyl-[acyl-carrier protein][c] '''+''' 1.0 CO2 CO2[c] '''+''' 1.0 Acyl carrier protein[c]
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**
 
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== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
* [[EF0283]]
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* Gene: [[EF0283]]
** [[pantograph]]-[[l_plantarum_wcfs1]]
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** Source: [[manual-4_newreactions]]
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
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* [[EF2880]]
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** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
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== Pathways  ==
 
== Pathways  ==
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
** '''460''' reactions found over '''2349''' reactions in the full pathway
 
* [[map01212]]: [http://www.genome.jp/dbget-bin/www_bget?map01212 map01212]
 
** '''36''' reactions found over '''182''' reactions in the full pathway
 
* [[map00061]]: [http://www.genome.jp/dbget-bin/www_bget?map00061 map00061]
 
** '''65''' reactions found over '''160''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* Category: [[orthology]]
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* Category: [[manual]]
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
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** Source: [[manual-4_newreactions]]
*** Tool: [[pantograph]]
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*** Comment: [[manual curation]]
** Source: [[orthology-l_plantarum_wcfs1]]
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*** Tool: [[pantograph]]
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== External links  ==
 
== External links  ==
* MetaNetX (MNX) Equation : MNXR94963
 
* EC Number : 2.3.1.86
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
{{#set: common name=3-oxoacyl-[acyl-carrier-protein] synthase (n-C6:0)}}
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{{#set: gene associated=EF0283}}
{{#set: gene associated=EF0283|EF2880}}
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{{#set: in pathway=}}
{{#set: in pathway=map01100|map01212|map00061}}
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{{#set: reconstruction category=manual}}
{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=manual-4_newreactions}}
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-l_plantarum_wcfs1}}
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{{#set: reconstruction comment=manual curation}}
{{#set: reconstruction tool=pantograph}}
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Latest revision as of 16:39, 21 March 2018

Reaction MCMAT4_manual

  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links