Difference between revisions of "MDDCP1ppc"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/CYTK2 CYTK2] == * direction: ** REVERSIBLE * common name: ** Cytidylate kinase (dCMP) * Synonym(s):...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/MDDCP1ppc MDDCP1ppc] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula == * With...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
== Reaction [http://bigg.ucsd.edu/universal/reactions/CYTK2 CYTK2] ==
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== Reaction [http://bigg.ucsd.edu/universal/reactions/MDDCP1ppc MDDCP1ppc] ==
 
* direction:
 
* direction:
** REVERSIBLE
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** LEFT-TO-RIGHT
* common name:
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** Cytidylate kinase (dCMP)
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* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
** 1.0 [[atp]][c] '''+''' 1.0 [[dcmp]][c] '''<=>''' 1.0 [[dcdp]][c] '''+''' 1.0 [[adp]][c]
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** 1.0 [[murein5px4p]][c] '''+''' 1.0 [[h2o]][c] '''=>''' 1.0 [[murein4px4p]][c] '''+''' 1.0 [[ala__D]][c]
 
* With common name(s):
 
* With common name(s):
** 1.0 ATP C10H12N5O13P3[c] '''+''' 1.0 DCMP C9H12N3O7P[c] '''<=>''' 1.0 DCDP C9H12N3O10P2[c] '''+''' 1.0 ADP C10H12N5O10P2[c]
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** 1.0 Two disacharide linked murein units, pentapeptide crosslinked tetrapeptide (A2pm->D-ala) (middle of chain)[c] '''+''' 1.0 H2O H2O[c] '''=>''' 1.0 Two disacharide linked murein units, tetrapeptide corsslinked tetrapeptide (A2pm->D-ala) (middle of chain)[c] '''+''' 1.0 D-Alanine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
* [[EF1547]]
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* Gene: [[EF3129]]
** [[pantograph]]-[[l_plantarum_wcfs1]]
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** Source: [[manual-1_new_rxn_for_biomass]]
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
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** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
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== Pathways  ==
 
== Pathways  ==
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
** '''460''' reactions found over '''2349''' reactions in the full pathway
 
* [[map00240]]: [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240]
 
** '''82''' reactions found over '''244''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* Category: [[orthology]]
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* Category: [[manual]]
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
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** Source: [[manual-1_new_rxn_for_biomass]]
*** Tool: [[pantograph]]
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*** Comment: [[this was a reaction occurring in the perisplasm of e. coli]]
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-l_plantarum_wcfs1]]
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*** Tool: [[pantograph]]
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== External links  ==
 
== External links  ==
* RHEA:
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{{#set: direction=LEFT-TO-RIGHT}}
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25094 25094]
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{{#set: gene associated=EF3129}}
* BioCyc : META:RXN-7913
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{{#set: in pathway=}}
* MetaNetX (MNX) Equation : MNXR97053
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{{#set: reconstruction category=manual}}
* KEGG Reaction : R01665
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{{#set: reconstruction source=manual-1_new_rxn_for_biomass}}
* EC Number : 2.7.4.13
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{{#set: reconstruction comment=this was a reaction occurring in the perisplasm of e. coli}}
{{#set: direction=REVERSIBLE}}
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{{#set: common name=Cytidylate kinase (dCMP)}}
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{{#set: gene associated=EF1547}}
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{{#set: in pathway=map01100|map00240}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168|orthology-l_plantarum_wcfs1}}
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{{#set: reconstruction tool=pantograph}}
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Latest revision as of 16:39, 21 March 2018

Reaction MDDCP1ppc

  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Two disacharide linked murein units, pentapeptide crosslinked tetrapeptide (A2pm->D-ala) (middle of chain)[c] + 1.0 H2O H2O[c] => 1.0 Two disacharide linked murein units, tetrapeptide corsslinked tetrapeptide (A2pm->D-ala) (middle of chain)[c] + 1.0 D-Alanine[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links