Difference between revisions of "MECDPS"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PRASCSi_copy1 PRASCSi_copy1] == * direction: ** REVERSIBLE * common name: ** phosphoribosylaminoimi...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/TKT2 TKT2] == * direction: ** REVERSIBLE * common name: ** Transketolase * Synonym(s): == Reaction...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/PRASCSi_copy1 PRASCSi_copy1] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/TKT2 TKT2] ==
 
* direction:
 
* direction:
 
** REVERSIBLE
 
** REVERSIBLE
 
* common name:
 
* common name:
−
** phosphoribosylaminoimidazolesuccinocarboxamide synthase
+
** Transketolase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[5aizc]][c] '''+''' 1.0 [[asp__L]][c] '''+''' 1.0 [[atp]][c] '''<=>''' 1.0 [[h]][c] '''+''' 1.0 [[pi]][c] '''+''' 1.0 [[adp]][c] '''+''' 1.0 [[25aics]][c]
+
** 1.0 [[xu5p__D]][c] '''+''' 1.0 [[e4p]][c] '''<=>''' 1.0 [[g3p]][c] '''+''' 1.0 [[f6p]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate[c] '''+''' 1.0 L-Aspartate[c] '''+''' 1.0 ATP C10H12N5O13P3[c] '''<=>''' 1.0 H+[c] '''+''' 1.0 Phosphate[c] '''+''' 1.0 ADP C10H12N5O10P2[c] '''+''' 1.0 (S)-2-[5-Amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido]succinate[c]
+
** 1.0 D-Xylulose 5-phosphate[c] '''+''' 1.0 D-Erythrose 4-phosphate[c] '''<=>''' 1.0 Glyceraldehyde 3-phosphate[c] '''+''' 1.0 D-Fructose 6-phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[EF1785]]
 
−
** [[pantograph]]-[[l_plantarum_wcfs1]]
 
 
== Pathways  ==
 
== Pathways  ==
 +
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 +
** '''460''' reactions found over '''2349''' reactions in the full pathway
 +
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 +
** '''179''' reactions found over '''1054''' reactions in the full pathway
 +
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
 +
** '''104''' reactions found over '''715''' reactions in the full pathway
 +
* [[map01200]]: [http://www.genome.jp/dbget-bin/www_bget?map01200 map01200]
 +
** '''45''' reactions found over '''220''' reactions in the full pathway
 +
* [[map00710]]: [http://www.genome.jp/dbget-bin/www_bget?map00710 map00710]
 +
** '''16''' reactions found over '''71''' reactions in the full pathway
 +
* [[map01051]]: [http://www.genome.jp/dbget-bin/www_bget?map01051 map01051]
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 +
** '''135''' reactions found over '''694''' reactions in the full pathway
 +
* [[map00030]]: [http://www.genome.jp/dbget-bin/www_bget?map00030 map00030]
 +
** '''26''' reactions found over '''69''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[gap-filling]]
−
** [[pantograph]]:
+
** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
−
*** [[l_plantarum_wcfs1]]
+
*** Tool: [[meneco]]
−
* [[manual]]:
+
**** Comment: [[added for gapfilling]]
−
** [[curation_from_orthology]]
+
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27626 27626]
 +
* EC Number : 2.2.1.1
 +
* MetaNetX (MNX) Equation : MNXR104869
 +
* KEGG Reaction : R01830
 +
* BioCyc : META:2TRANSKETO-RXN
 
{{#set: direction=REVERSIBLE}}
 
{{#set: direction=REVERSIBLE}}
−
{{#set: common name=phosphoribosylaminoimidazolesuccinocarboxamide synthase}}
+
{{#set: common name=Transketolase}}
−
{{#set: gene associated=EF1785}}
+
{{#set: in pathway=map01100|map01110|map01120|map01200|map00710|map01051|map01130|map00030}}
−
{{#set: in pathway=}}
+
{{#set: reconstruction category=gap-filling}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction tool=meneco}}
−
{{#set: reconstruction source=l_plantarum_wcfs1}}
+
{{#set: reconstruction comment=added for gapfilling}}
−
{{#set: reconstruction category=manual}}
+
−
{{#set: reconstruction source=curation_from_orthology}}
+

Revision as of 19:32, 18 March 2018

Reaction TKT2

  • direction:
    • REVERSIBLE
  • common name:
    • Transketolase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 D-Xylulose 5-phosphate[c] + 1.0 D-Erythrose 4-phosphate[c] <=> 1.0 Glyceraldehyde 3-phosphate[c] + 1.0 D-Fructose 6-phosphate[c]

Genes associated with this reaction

Pathways

Reconstruction information

External links

  • RHEA:
  • EC Number : 2.2.1.1
  • MetaNetX (MNX) Equation : MNXR104869
  • KEGG Reaction : R01830
  • BioCyc : META:2TRANSKETO-RXN




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