Difference between revisions of "Manual-curation from orthology"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/RBP4E RBP4E] == * direction: ** REVERSIBLE * common name: ** L-ribulose-phosphate 4-epimerase * Syn...")
 
(Created page with "{{#ask: Category:Reaction reconstruction source::manual-curation_from_orthology | ?COMMON NAME | ?ec number | ?reconstruction category | ?reconstruction tool | ?recons...")
 
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[[Category:Reaction]]
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{{#ask: [[Category:Reaction]] [[reconstruction source::manual-curation_from_orthology]]
== Reaction [http://bigg.ucsd.edu/universal/reactions/RBP4E RBP4E] ==
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| ?COMMON NAME
* direction:
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| ?ec number
** REVERSIBLE
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| ?reconstruction category
* common name:
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| ?reconstruction tool
** L-ribulose-phosphate 4-epimerase
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| ?reconstruction source
* Synonym(s):
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| ?reconstruction comment
 
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| ?gene associated
== Reaction Formula ==
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| ?in pathway
* With identifiers:
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}}
** 1.0 [[ru5p__L]][c] '''<=>''' 1.0 [[xu5p__D]][c]
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* With common name(s):
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** 1.0 L-Ribulose 5-phosphate[c] '''<=>''' 1.0 D-Xylulose 5-phosphate[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[EF1131]]
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** [[pantograph]]-[[l_plantarum_wcfs1]]
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** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
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** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
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== Pathways  ==
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* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
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** '''508''' reactions found over '''2349''' reactions in the full pathway
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* [[map00040]]: [http://www.genome.jp/dbget-bin/www_bget?map00040 map00040]
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** '''15''' reactions found over '''54''' reactions in the full pathway
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* [[map00053]]: [http://www.genome.jp/dbget-bin/www_bget?map00053 map00053]
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** '''7''' reactions found over '''50''' reactions in the full pathway
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* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
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** '''111''' reactions found over '''715''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[e_coli_sstr_k12_substr_mg1655]]
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*** [[l_plantarum_wcfs1]]
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*** [[b_subtilis_subsp_subtilis_str168]]
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== External links  ==
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* RHEA:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22368 22368]
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* BioCyc : META:RIBULPEPIM-RXN
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* MetaNetX (MNX) Equation : MNXR103434
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* KEGG Reaction : R05850
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* EC Number : 5.1.3.4
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=L-ribulose-phosphate 4-epimerase}}
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{{#set: gene associated=EF1131}}
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{{#set: in pathway=map01100|map00040|map00053|map01120}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655|l_plantarum_wcfs1|b_subtilis_subsp_subtilis_str168}}
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Latest revision as of 16:46, 21 March 2018

 COMMON NAMEEc numberReconstruction categoryReconstruction toolReconstruction sourceReconstruction commentGene associatedIn pathway
AEPPTOrthology
Manual
PantographManual-curation from orthology
Orthology-l plantarum wcfs1
EF2994
AGAT LPLOrthology
Manual
PantographManual-curation from orthology
Orthology-l plantarum wcfs1
EF2691
AHMMPS LPLOrthology
Manual
PantographManual-curation from orthology
Orthology-l plantarum wcfs1
EF3255
ALALACOrthology
Manual
PantographManual-curation from orthology
Orthology-l plantarum wcfs1
EF0843
ALAt2pp copy1Orthology
Manual
PantographOrthology-e coli sstr k12 substr mg1655
Manual-curation from orthology
EF1103
ASPt2pp copy1Orthology
Manual
PantographOrthology-e coli sstr k12 substr mg1655
Manual-curation from orthology
EF0387
CLPNS LPLOrthology
Manual
PantographManual-curation from orthology
Orthology-l plantarum wcfs1
EF1608
CRCTOrthology
Manual
PantographManual-curation from orthology
Orthology-l plantarum wcfs1
EF2172
CYSTGL 1Orthology
Manual
PantographManual-curation from orthology
Orthology-b subtilis subsp subtilis str168
EF0290
CYSTS 2Orthology
Manual
PantographManual-curation from orthology
Orthology-b subtilis subsp subtilis str168
EF0289
DAGGT LPLOrthology
Manual
PantographManual-curation from orthology
Orthology-l plantarum wcfs1
EF2891
EF2890
DAGK LPLOrthology
Manual
PantographManual-curation from orthology
Orthology-l plantarum wcfs1
EF2411
DALTALOrthology
Manual
PantographManual-curation from orthology
Orthology-l plantarum wcfs1
EF2749
EF2746
EF2748
EF2747
DARTALOrthology
Manual
PantographManual-curation from orthology
Orthology-l plantarum wcfs1
EF2748
EF2746
EF2749
EF2747
DASYN LPLOrthology
Manual
PantographManual-curation from orthology
Orthology-l plantarum wcfs1
EF2494
DHFOR2Orthology
Manual
PantographManual-curation from orthology
Orthology-b subtilis subsp subtilis str168
EF1577
G3POcOrthology
Manual
PantographManual-curation from orthology
Orthology-l plantarum wcfs1
EF1928
GLNTALOrthology
Manual
PantographManual-curation from orthology
Orthology-l plantarum wcfs1
EF0724
EF0725
EF0726
GLYt2pp copy1Orthology
Manual
PantographOrthology-e coli sstr k12 substr mg1655
Manual-curation from orthology
EF1103
GRTALOrthology
Manual
PantographManual-curation from orthology
Orthology-l plantarum wcfs1
EF2627
HMGCOASiOrthology
Manual
PantographManual-curation from orthology
Orthology-b subtilis subsp subtilis str168
EF1363
ICHOrthology
Manual
PantographManual-curation from orthology
Orthology-b subtilis subsp subtilis str168
EF1778
ICHORS copy1Orthology
Manual
PantographOrthology-e coli sstr k12 substr mg1655
Manual-curation from orthology
EF0447
ICHORS copy2Orthology
Manual
PantographOrthology-e coli sstr k12 substr mg1655
Manual-curation from orthology
EF0447
LPGS LPLOrthology
Manual
PantographManual-curation from orthology
Orthology-l plantarum wcfs1
EF0031
MALPOrthology
Manual
PantographManual-curation from orthology
Orthology-l plantarum wcfs1
EF3157
EF0957
MOCOS LPLOrthology
Manual
PantographManual-curation from orthology
Orthology-l plantarum wcfs1
EF1391
NCTPPRTOrthology
Manual
PantographManual-curation from orthology
Orthology-b subtilis subsp subtilis str168
EF2626
NH3tOrthology
Manual
PantographManual-curation from orthology
Orthology-l plantarum wcfs1
EF0547
NO3abcOrthology
Manual
PantographManual-curation from orthology
Orthology-l plantarum wcfs1
EF1054
EF1053
PAPPT5Orthology
Manual
PantographManual-curation from orthology
Orthology-l plantarum wcfs1
EF0992
PGGT4Orthology
Manual
PantographManual-curation from orthology
Orthology-l plantarum wcfs1
EF1148
EF0680
EF2857
EF0991
PGK 1Orthology
Manual
PantographManual-curation from orthology
Orthology-b subtilis subsp subtilis str168
EF1963
PGM 1Orthology
Manual
PantographManual-curation from orthology
Orthology-l plantarum wcfs1
EF2664
EF2433
EF0273
EF0195
PGSA LPLOrthology
Manual
PantographManual-curation from orthology
Orthology-l plantarum wcfs1
EF3148
PRASCSi copy1Orthology
Manual
PantographManual-curation from orthology
Orthology-l plantarum wcfs1
EF1785
PZSOrthology
Manual
PantographManual-curation from orthology
Orthology-l plantarum wcfs1
EF1392
EF1393
EF1395
SBTDOrthology
Manual
PantographManual-curation from orthology
Orthology-l plantarum wcfs1
EF1826
SPMDt3Orthology
Manual
PantographManual-curation from orthology
Orthology-b subtilis subsp subtilis str168
EF1078
THRA2iOrthology
Manual
PantographOrthology-e coli sstr k12 substr mg1655
Manual-curation from orthology
EF2550
THRAiOrthology
Manual
PantographOrthology-e coli sstr k12 substr mg1655
Manual-curation from orthology
EF2550
UAGPT5Orthology
Manual
PantographManual-curation from orthology
Orthology-l plantarum wcfs1
EF0994
UGMDDS2 LPLOrthology
Manual
PantographManual-curation from orthology
Orthology-l plantarum wcfs1
EF0845
UNAGAMAMTOrthology
Manual
PantographManual-curation from orthology
Orthology-l plantarum wcfs1
EF1173
URAt2pp copy1Orthology
Manual
PantographOrthology-e coli sstr k12 substr mg1655
Manual-curation from orthology
EF1720
URIDK2r copy1Orthology
Manual
PantographManual-curation from orthology
Orthology-b subtilis subsp subtilis str168
EF2396
EF1547
URIDK2r copy2Orthology
Manual
PantographManual-curation from orthology
Orthology-b subtilis subsp subtilis str168
EF2764