Difference between revisions of "Map00040"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/URIH URIH] == * direction: ** LEFT-TO-RIGHT * common name: ** Uridine hydrolase * Synonym(s): == R...")
 
(Created page with "Category:Pathway == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00040 map00040] == * common_name: ** Pentose and glucuronate interconversions * Synonym(s): == Rea...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://bigg.ucsd.edu/universal/reactions/URIH URIH] ==
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== Pathway [http://www.genome.jp/dbget-bin/www_bget?map00040 map00040] ==
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* direction:
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* common_name:
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** LEFT-TO-RIGHT
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** Pentose and glucuronate interconversions
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* common name:
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** Uridine hydrolase
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''15''' reactions found over '''54''' reactions in the full pathway
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** 1.0 [[uri]][c] '''+''' 1.0 [[h2o]][c] '''=>''' 1.0 [[rib__D]][c] '''+''' 1.0 [[ura]][c]
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* [[GALT]]
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* With common name(s):
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** 1 associated gene(s):
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** 1.0 Uridine[c] '''+''' 1.0 H2O H2O[c] '''=>''' 1.0 D-Ribose[c] '''+''' 1.0 Uracil[c]
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*** [[EF1071]]
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** 2 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[orthology-b_subtilis_subsp_subtilis_str168]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-l_plantarum_wcfs1]]
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* [[EF1921]]
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* [[GALUi]]
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** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
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** 1 associated gene(s):
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== Pathways  ==
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*** [[EF1746]]
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* [[map00240]]: [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240]
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** 3 reconstruction source(s) associated:
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** '''83''' reactions found over '''244''' reactions in the full pathway
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*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
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* [[map00760]]: [http://www.genome.jp/dbget-bin/www_bget?map00760 map00760]
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*** [[orthology-b_subtilis_subsp_subtilis_str168]]
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** '''25''' reactions found over '''97''' reactions in the full pathway
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*** [[orthology-l_plantarum_wcfs1]]
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== Reconstruction information  ==
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* [[KG6PDC]]
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* [[orthology]]:
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** 1 associated gene(s):
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** [[pantograph]]:
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*** [[EF1129]]
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*** [[e_coli_sstr_k12_substr_mg1655]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
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* [[LYXI]]
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** 1 associated gene(s):
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*** [[EF0434]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
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* [[MNNH]]
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** 1 associated gene(s):
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*** [[EF3135]]
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** 2 reconstruction source(s) associated:
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*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
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*** [[orthology-b_subtilis_subsp_subtilis_str168]]
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* [[RBP4E]]
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** 1 associated gene(s):
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*** [[EF1131]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
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*** [[orthology-b_subtilis_subsp_subtilis_str168]]
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*** [[orthology-l_plantarum_wcfs1]]
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* [[RMK]]
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** 1 associated gene(s):
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*** [[EF0433]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
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*** [[orthology-b_subtilis_subsp_subtilis_str168]]
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*** [[orthology-l_plantarum_wcfs1]]
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* [[RMPA]]
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** 1 associated gene(s):
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*** [[EF0435]]
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** 2 reconstruction source(s) associated:
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*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
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*** [[orthology-l_plantarum_wcfs1]]
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* [[RPE]]
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** 1 associated gene(s):
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*** [[EF3118]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
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*** [[orthology-b_subtilis_subsp_subtilis_str168]]
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*** [[orthology-l_plantarum_wcfs1]]
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* [[SBTD_D2]]
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** 1 associated gene(s):
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*** [[EF1826]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-l_plantarum_wcfs1]]
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* [[SBTD_L]]
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** 1 associated gene(s):
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*** [[EF1826]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-l_plantarum_wcfs1]]
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* [[X5PL3E]]
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** 1 associated gene(s):
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*** [[EF1130]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
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* [[XYLI1]]
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** 1 associated gene(s):
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*** [[EF0556]]
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** 2 reconstruction source(s) associated:
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*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
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*** [[orthology-b_subtilis_subsp_subtilis_str168]]
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* [[XYLI2]]
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** 1 associated gene(s):
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*** [[EF0556]]
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** 2 reconstruction source(s) associated:
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*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
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*** [[orthology-b_subtilis_subsp_subtilis_str168]]
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* [[XYLK]]
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** 1 associated gene(s):
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*** [[EF0557]]
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** 2 reconstruction source(s) associated:
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*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
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*** [[orthology-b_subtilis_subsp_subtilis_str168]]
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== Reaction(s) not found ==
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* [http://bigg.ucsd.edu/universal/reactions/3KGK 3KGK]
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* [http://bigg.ucsd.edu/universal/reactions/ABTD ABTD]
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* [http://bigg.ucsd.edu/universal/reactions/ABTDG ABTDG]
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* [http://bigg.ucsd.edu/universal/reactions/ALCD22_L ALCD22_L]
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* [http://bigg.ucsd.edu/universal/reactions/ALTRH ALTRH]
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* [http://bigg.ucsd.edu/universal/reactions/ARABR ARABR]
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* [http://bigg.ucsd.edu/universal/reactions/ARAI ARAI]
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* [http://bigg.ucsd.edu/universal/reactions/BILIRBU BILIRBU]
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* [http://bigg.ucsd.edu/universal/reactions/DGC3D DGC3D]
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* [http://bigg.ucsd.edu/universal/reactions/DGULND DGULND]
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* [http://bigg.ucsd.edu/universal/reactions/DOGULND1 DOGULND1]
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* [http://bigg.ucsd.edu/universal/reactions/DOGULND2 DOGULND2]
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* [http://bigg.ucsd.edu/universal/reactions/DOGULNR DOGULNR]
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* [http://bigg.ucsd.edu/universal/reactions/FBA4 FBA4]
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* [http://bigg.ucsd.edu/universal/reactions/GALOR GALOR]
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* [http://bigg.ucsd.edu/universal/reactions/GUI1 GUI1]
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* [http://bigg.ucsd.edu/universal/reactions/GULN3D GULN3D]
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* [http://bigg.ucsd.edu/universal/reactions/GULND GULND]
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* [http://bigg.ucsd.edu/universal/reactions/GULNDer GULNDer]
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* [http://bigg.ucsd.edu/universal/reactions/GULNLR GULNLR]
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* [http://bigg.ucsd.edu/universal/reactions/MANAO MANAO]
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* [http://bigg.ucsd.edu/universal/reactions/RBK_L1 RBK_L1]
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* [http://bigg.ucsd.edu/universal/reactions/RBTDG RBTDG]
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* [http://bigg.ucsd.edu/universal/reactions/RPEh RPEh]
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* [http://bigg.ucsd.edu/universal/reactions/SBTRh SBTRh]
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* [http://bigg.ucsd.edu/universal/reactions/TAGURr TAGURr]
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* [http://bigg.ucsd.edu/universal/reactions/UDPGD UDPGD]
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* [http://bigg.ucsd.edu/universal/reactions/UGT1A10r UGT1A10r]
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* [http://bigg.ucsd.edu/universal/reactions/UGT1A1r UGT1A1r]
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* [http://bigg.ucsd.edu/universal/reactions/UGT1A3r UGT1A3r]
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* [http://bigg.ucsd.edu/universal/reactions/UGT1A4r UGT1A4r]
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* [http://bigg.ucsd.edu/universal/reactions/UGT1A5r UGT1A5r]
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* [http://bigg.ucsd.edu/universal/reactions/UGT1A6r UGT1A6r]
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* [http://bigg.ucsd.edu/universal/reactions/UGT1A7r UGT1A7r]
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* [http://bigg.ucsd.edu/universal/reactions/UGT1A8r UGT1A8r]
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* [http://bigg.ucsd.edu/universal/reactions/XYLK2 XYLK2]
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* [http://bigg.ucsd.edu/universal/reactions/XYLR XYLR]
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* [http://bigg.ucsd.edu/universal/reactions/XYLTD_D XYLTD_D]
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* [http://bigg.ucsd.edu/universal/reactions/XYLUR XYLUR]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: common_name=Pentose and glucuronate interconversions}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15577 15577]
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{{#set: reaction found=15}}
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* BioCyc : META:URIDINE-NUCLEOSIDASE-RXN
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{{#set: total reaction=54}}
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* MetaNetX (MNX) Equation : MNXR105161
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{{#set: completion rate=28.0}}
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* KEGG Reaction : R01080
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* EC Number : 3.2.2.3
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Uridine hydrolase}}
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{{#set: gene associated=EF1921}}
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{{#set: in pathway=map00240|map00760}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655}}
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Latest revision as of 16:08, 21 March 2018

Pathway map00040

  • common_name:
    • Pentose and glucuronate interconversions
  • Synonym(s):

Reaction(s) found

15 reactions found over 54 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/efaecV583/index.php?title=Map00040&oldid=8747"