Difference between revisions of "NDPK6"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/SHK3Dr SHK3Dr] == * direction: ** REVERSIBLE * common name: ** Shikimate dehydrogenase * Synonym(s)...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/NDPK6 NDPK6] == * direction: ** REVERSIBLE * common name: ** Nucleoside-diphosphate kinase (ATP:dUD...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/SHK3Dr SHK3Dr] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/NDPK6 NDPK6] ==
 
* direction:
 
* direction:
 
** REVERSIBLE
 
** REVERSIBLE
 
* common name:
 
* common name:
−
** Shikimate dehydrogenase
+
** Nucleoside-diphosphate kinase (ATP:dUDP)
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[nadph]][c] '''+''' 1.0 [[h]][c] '''+''' 1.0 [[3dhsk]][c] '''<=>''' 1.0 [[nadp]][c] '''+''' 1.0 [[skm]][c]
+
** 1.0 [[dudp]][c] '''+''' 1.0 [[atp]][c] '''<=>''' 1.0 [[dutp]][c] '''+''' 1.0 [[adp]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 Nicotinamide adenine dinucleotide phosphate - reduced[c] '''+''' 1.0 H+[c] '''+''' 1.0 3-Dehydroshikimate[c] '''<=>''' 1.0 Nicotinamide adenine dinucleotide phosphate[c] '''+''' 1.0 Shikimate[c]
+
** 1.0 DUDP C9H11N2O11P2[c] '''+''' 1.0 ATP C10H12N5O13P3[c] '''<=>''' 1.0 DUTP C9H11N2O14P3[c] '''+''' 1.0 ADP C10H12N5O10P2[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF1561]]
+
* Gene: [[EF0228]]
−
** [[pantograph]]-[[l_plantarum_wcfs1]]
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
+
* Gene: [[EF1036]]
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
+
** Source: [[orthology-l_plantarum_wcfs1]]
 +
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 
== Pathways  ==
 
== Pathways  ==
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
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* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 
** '''135''' reactions found over '''694''' reactions in the full pathway
 
** '''135''' reactions found over '''694''' reactions in the full pathway
−
* [[map00400]]: [http://www.genome.jp/dbget-bin/www_bget?map00400 map00400]
 
−
** '''13''' reactions found over '''59''' reactions in the full pathway
 
 
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 
** '''179''' reactions found over '''1054''' reactions in the full pathway
 
** '''179''' reactions found over '''1054''' reactions in the full pathway
−
* [[map01230]]: [http://www.genome.jp/dbget-bin/www_bget?map01230 map01230]
+
* [[map00240]]: [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240]
−
** '''56''' reactions found over '''228''' reactions in the full pathway
+
** '''82''' reactions found over '''244''' reactions in the full pathway
 +
* [[map00230]]: [http://www.genome.jp/dbget-bin/www_bget?map00230 map00230]
 +
** '''97''' reactions found over '''298''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
*** [[e_coli_sstr_k12_substr_mg1655]]
+
*** Tool: [[pantograph]]
−
*** [[l_plantarum_wcfs1]]
+
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
−
*** [[b_subtilis_subsp_subtilis_str168]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
* EC Number : 1.1.1.25
 
−
* BioCyc : META:SHIKIMATE-5-DEHYDROGENASE-RXN
 
−
* MetaNetX (MNX) Equation : MNXR104378
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17737 17737]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28582 28582]
−
* Reactome : REACT_R-MTU-964842
+
* BioCyc : META:DUDPKIN-RXN
−
* KEGG Reaction : R02413
+
* MetaNetX (MNX) Equation : MNXR101938
 +
* KEGG Reaction : R02331
 +
* EC Number : 2.7.4.6
 
{{#set: direction=REVERSIBLE}}
 
{{#set: direction=REVERSIBLE}}
−
{{#set: common name=Shikimate dehydrogenase}}
+
{{#set: common name=Nucleoside-diphosphate kinase (ATP:dUDP)}}
−
{{#set: gene associated=EF1561}}
+
{{#set: gene associated=EF0228|EF1036}}
−
{{#set: in pathway=map01100|map01130|map00400|map01110|map01230}}
+
{{#set: in pathway=map01100|map01130|map01110|map00240|map00230}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168|orthology-l_plantarum_wcfs1}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655|l_plantarum_wcfs1|b_subtilis_subsp_subtilis_str168}}
 

Latest revision as of 16:45, 21 March 2018

Reaction NDPK6

  • direction:
    • REVERSIBLE
  • common name:
    • Nucleoside-diphosphate kinase (ATP:dUDP)
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 DUDP C9H11N2O11P2[c] + 1.0 ATP C10H12N5O13P3[c] <=> 1.0 DUTP C9H11N2O14P3[c] + 1.0 ADP C10H12N5O10P2[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:DUDPKIN-RXN
  • MetaNetX (MNX) Equation : MNXR101938
  • KEGG Reaction : R02331
  • EC Number : 2.7.4.6




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