Difference between revisions of "PGCD"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/DRPA DRPA] == * direction: ** LEFT-TO-RIGHT * common name: ** Deoxyribose-phosphate aldolase * Syno...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PGCD PGCD] == * direction: ** LEFT-TO-RIGHT * common name: ** Phosphoglycerate dehydrogenase * Syno...")
 
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/DRPA DRPA] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/PGCD PGCD] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Deoxyribose-phosphate aldolase
+
** Phosphoglycerate dehydrogenase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[2dr5p]][c] '''=>''' 1.0 [[g3p]][c] '''+''' 1.0 [[acald]][c]
+
** 1.0 [[nad]][c] '''+''' 1.0 [[3pg]][c] '''=>''' 1.0 [[nadh]][c] '''+''' 1.0 [[3php]][c] '''+''' 1.0 [[h]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 2-Deoxy-D-ribose 5-phosphate[c] '''=>''' 1.0 Glyceraldehyde 3-phosphate[c] '''+''' 1.0 Acetaldehyde[c]
+
** 1.0 Nicotinamide adenine dinucleotide[c] '''+''' 1.0 3-Phospho-D-glycerate[c] '''=>''' 1.0 Nicotinamide adenine dinucleotide - reduced[c] '''+''' 1.0 3-Phosphohydroxypyruvate[c] '''+''' 1.0 H+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF0174]]
+
* Gene: [[EF2901]]
−
** [[pantograph]]-[[l_plantarum_wcfs1]]
+
** Source: [[orthology-l_plantarum_wcfs1]]
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
+
* Gene: [[EF3141]]
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
+
** Source: [[orthology-l_plantarum_wcfs1]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[map00030]]: [http://www.genome.jp/dbget-bin/www_bget?map00030 map00030]
+
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
−
** '''26''' reactions found over '''69''' reactions in the full pathway
+
** '''460''' reactions found over '''2349''' reactions in the full pathway
 +
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
 +
** '''104''' reactions found over '''715''' reactions in the full pathway
 +
* [[map01200]]: [http://www.genome.jp/dbget-bin/www_bget?map01200 map01200]
 +
** '''45''' reactions found over '''220''' reactions in the full pathway
 +
* [[map01230]]: [http://www.genome.jp/dbget-bin/www_bget?map01230 map01230]
 +
** '''56''' reactions found over '''228''' reactions in the full pathway
 +
* [[map00680]]: [http://www.genome.jp/dbget-bin/www_bget?map00680 map00680]
 +
** '''18''' reactions found over '''75''' reactions in the full pathway
 +
* [[map00260]]: [http://www.genome.jp/dbget-bin/www_bget?map00260 map00260]
 +
** '''23''' reactions found over '''133''' reactions in the full pathway
 +
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 +
** '''135''' reactions found over '''694''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
−
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 
−
*** Tool: [[pantograph]]
 
 
** Source: [[orthology-l_plantarum_wcfs1]]
 
** Source: [[orthology-l_plantarum_wcfs1]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
* EC Number : 4.1.2.4
+
* EC Number : 1.1.1.95
−
* BioCyc : META:DEOXYRIBOSE-P-ALD-RXN
+
* BioCyc : META:PGLYCDEHYDROG-RXN
−
* MetaNetX (MNX) Equation : MNXR97787
+
* MetaNetX (MNX) Equation : MNXR102527
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12821 12821]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12641 12641]
−
* Reactome : REACT_R-BTA-6787321
+
* Reactome : REACT_R-ATH-977348
−
* KEGG Reaction : R01066
+
* KEGG Reaction : R01513
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Deoxyribose-phosphate aldolase}}
+
{{#set: common name=Phosphoglycerate dehydrogenase}}
−
{{#set: gene associated=EF0174}}
+
{{#set: gene associated=EF2901|EF3141}}
−
{{#set: in pathway=map00030}}
+
{{#set: in pathway=map01100|map01120|map01200|map01230|map00680|map00260|map01130}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168|orthology-l_plantarum_wcfs1}}
+
{{#set: reconstruction source=orthology-l_plantarum_wcfs1}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}

Latest revision as of 16:46, 21 March 2018

Reaction PGCD

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Phosphoglycerate dehydrogenase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Nicotinamide adenine dinucleotide[c] + 1.0 3-Phospho-D-glycerate[c] => 1.0 Nicotinamide adenine dinucleotide - reduced[c] + 1.0 3-Phosphohydroxypyruvate[c] + 1.0 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • EC Number : 1.1.1.95
  • BioCyc : META:PGLYCDEHYDROG-RXN
  • MetaNetX (MNX) Equation : MNXR102527
  • RHEA:
  • Reactome : REACT_R-ATH-977348
  • KEGG Reaction : R01513




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