Difference between revisions of "PGLYCP"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/AASDH1_c AASDH1_c] == * direction: ** LEFT-TO-RIGHT * common name: ** L-aminoadipate-semialdehyde d...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PGLYCP PGLYCP] == * direction: ** LEFT-TO-RIGHT * common name: ** Phosphoglycolate phosphatase * Sy...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/AASDH1_c AASDH1_c] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/PGLYCP PGLYCP] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** L-aminoadipate-semialdehyde dehydrogenase (NADPH)
+
** Phosphoglycolate phosphatase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[h2o]][c] '''+''' 1.0 [[L2aadp6sa]][c] '''+''' 1.0 [[nadp]][c] '''=>''' 1.0 [[L2aadp]][c] '''+''' 1.0 [[nadph]][c] '''+''' 2.0 [[h]][c]
+
** 1.0 [[2pglyc]][c] '''+''' 1.0 [[h2o]][c] '''=>''' 1.0 [[pi]][c] '''+''' 1.0 [[glyclt]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 H2O H2O[c] '''+''' 1.0 L 2 Aminoadipate 6 semialdehyde C6H11NO3[c] '''+''' 1.0 Nicotinamide adenine dinucleotide phosphate[c] '''=>''' 1.0 L 2 Aminoadipate C6H10NO4[c] '''+''' 1.0 Nicotinamide adenine dinucleotide phosphate - reduced[c] '''+''' 2.0 H+[c]
+
** 1.0 2-Phosphoglycolate[c] '''+''' 1.0 H2O H2O[c] '''=>''' 1.0 Phosphate[c] '''+''' 1.0 Glycolate C2H3O3[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[EF2927]]
 +
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
* Gene: [[EF2916]]
 +
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
* Gene: [[EF2481]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
* Gene: [[EF0369]]
 +
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 +
** '''460''' reactions found over '''2349''' reactions in the full pathway
 +
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 +
** '''135''' reactions found over '''694''' reactions in the full pathway
 +
* [[map01200]]: [http://www.genome.jp/dbget-bin/www_bget?map01200 map01200]
 +
** '''45''' reactions found over '''220''' reactions in the full pathway
 +
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 +
** '''179''' reactions found over '''1054''' reactions in the full pathway
 +
* [[map00630]]: [http://www.genome.jp/dbget-bin/www_bget?map00630 map00630]
 +
** '''21''' reactions found over '''129''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[gap-filling]]
+
* Category: [[orthology]]
−
** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
*** Tool: [[meneco]]
+
*** Tool: [[pantograph]]
−
**** Comment: [[added for gapfilling]]
+
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14369 14369]
 +
* BioCyc : META:GPH-RXN
 +
* MetaNetX (MNX) Equation : MNXR102543
 +
* KEGG Reaction : R01334
 +
* EC Number : 3.1.3.18
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=L-aminoadipate-semialdehyde dehydrogenase (NADPH)}}
+
{{#set: common name=Phosphoglycolate phosphatase}}
−
{{#set: in pathway=}}
+
{{#set: gene associated=EF2927|EF2916|EF2481|EF0369}}
−
{{#set: reconstruction category=gap-filling}}
+
{{#set: in pathway=map01100|map01130|map01200|map01110|map00630}}
−
{{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction tool=meneco}}
+
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168|orthology-l_plantarum_wcfs1}}
−
{{#set: reconstruction comment=added for gapfilling}}
+
{{#set: reconstruction tool=pantograph}}

Latest revision as of 16:28, 21 March 2018

Reaction PGLYCP

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Phosphoglycolate phosphatase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 2-Phosphoglycolate[c] + 1.0 H2O H2O[c] => 1.0 Phosphate[c] + 1.0 Glycolate C2H3O3[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:GPH-RXN
  • MetaNetX (MNX) Equation : MNXR102543
  • KEGG Reaction : R01334
  • EC Number : 3.1.3.18




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