Difference between revisions of "PKL"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/NDPK7 NDPK7] == * direction: ** REVERSIBLE * common name: ** Nucleoside-diphosphate kinase (ATP:dCD...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PKL PKL] == * direction: ** REVERSIBLE * Synonym(s): == Reaction Formula == * With identifiers: **...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://bigg.ucsd.edu/universal/reactions/NDPK7 NDPK7] ==
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== Reaction [http://bigg.ucsd.edu/universal/reactions/PKL PKL] ==
 
* direction:
 
* direction:
 
** REVERSIBLE
 
** REVERSIBLE
−
* common name:
 
−
** Nucleoside-diphosphate kinase (ATP:dCDP)
 
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[dcdp]][c] '''+''' 1.0 [[atp]][c] '''<=>''' 1.0 [[adp]][c] '''+''' 1.0 [[dctp]][c]
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** 1.0 [[xu5p__D]][c] '''+''' 1.0 [[pi]][c] '''<=>''' 1.0 [[g3p]][c] '''+''' 1.0 [[h2o]][c] '''+''' 1.0 [[actp]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 DCDP C9H12N3O10P2[c] '''+''' 1.0 ATP C10H12N5O13P3[c] '''<=>''' 1.0 ADP C10H12N5O10P2[c] '''+''' 1.0 DCTP C9H12N3O13P3[c]
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** 1.0 D-Xylulose 5-phosphate[c] '''+''' 1.0 Phosphate[c] '''<=>''' 1.0 Glyceraldehyde 3-phosphate[c] '''+''' 1.0 H2O H2O[c] '''+''' 1.0 Acetyl phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
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* [[EF1036]]
 
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** [[pantograph]]-[[l_plantarum_wcfs1]]
 
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** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 
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** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 
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* [[EF0228]]
 
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** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 
 
== Pathways  ==
 
== Pathways  ==
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* [[map00240]]: [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240]
 
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** '''82''' reactions found over '''244''' reactions in the full pathway
 
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* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
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** '''460''' reactions found over '''2349''' reactions in the full pathway
 
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* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 
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** '''179''' reactions found over '''1054''' reactions in the full pathway
 
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* [[map00230]]: [http://www.genome.jp/dbget-bin/www_bget?map00230 map00230]
 
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** '''97''' reactions found over '''298''' reactions in the full pathway
 
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* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 
−
** '''135''' reactions found over '''694''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
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* Category: [[manual]]
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** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
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** Source: [[manual-1_new_rxn_for_biomass]]
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*** Tool: [[pantograph]]
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*** Comment: [[reaction added for biomass, from model l.plantarum]]
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** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
+
−
*** Tool: [[pantograph]]
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−
** Source: [[orthology-l_plantarum_wcfs1]]
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−
*** Tool: [[pantograph]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27678 27678]
 
−
* BioCyc : META:DCDPKIN-RXN
 
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* MetaNetX (MNX) Equation : MNXR101939
 
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* KEGG Reaction : R02326
 
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* EC Number : 2.7.4.6
 
 
{{#set: direction=REVERSIBLE}}
 
{{#set: direction=REVERSIBLE}}
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{{#set: common name=Nucleoside-diphosphate kinase (ATP:dCDP)}}
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{{#set: in pathway=}}
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{{#set: gene associated=EF1036|EF0228}}
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{{#set: reconstruction category=manual}}
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{{#set: in pathway=map00240|map01100|map01110|map00230|map01130}}
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{{#set: reconstruction source=manual-1_new_rxn_for_biomass}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction comment=reaction added for biomass, from model l.plantarum}}
−
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168|orthology-l_plantarum_wcfs1}}
+
−
{{#set: reconstruction tool=pantograph}}
+

Latest revision as of 16:43, 21 March 2018

Reaction PKL

  • direction:
    • REVERSIBLE
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 D-Xylulose 5-phosphate[c] + 1.0 Phosphate[c] <=> 1.0 Glyceraldehyde 3-phosphate[c] + 1.0 H2O H2O[c] + 1.0 Acetyl phosphate[c]

Genes associated with this reaction

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/efaecV583/index.php?title=PKL&oldid=11088"