Difference between revisions of "PROTS LPL v60"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PPM2 PPM2] == * direction: ** REVERSIBLE * common name: ** Phosphopentomutase 2 (deoxyribose) * Syn...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PROTS_LPL_v60 PROTS_LPL_v60] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula ==...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://bigg.ucsd.edu/universal/reactions/PPM2 PPM2] ==
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== Reaction [http://bigg.ucsd.edu/universal/reactions/PROTS_LPL_v60 PROTS_LPL_v60] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
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** LEFT-TO-RIGHT
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* common name:
+
−
** Phosphopentomutase 2 (deoxyribose)
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* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[2dr1p]][c] '''<=>''' 1.0 [[2dr5p]][c]
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** 0.06 [[valtrna]][c] '''+''' 0.04 [[protrna]][c] '''+''' 0.056 [[sertrna]][c] '''+''' 0.022 [[mettrna]][c] '''+''' 0.306 [[atp]][c] '''+''' 2.306 [[h2o]][c] '''+''' 0.125 [[alatrna]][c] '''+''' 0.011 [[cystrna]][c] '''+''' 0.043 [[iletrna]][c] '''+''' 0.064 [[thrtrna]][c] '''+''' 0.06 [[asntrna]][c] '''+''' 0.083 [[glntrna]][c] '''+''' 0.023 [[glutrna]][c] '''+''' 0.078 [[leutrna]][c] '''+''' 0.034 [[phetrna]][c] '''+''' 0.006 [[trptrna]][c] '''+''' 0.084 [[glytrna]][c] '''+''' 0.017 [[histrna]][c] '''+''' 0.066 [[lystrna]][c] '''+''' 0.04 [[argtrna]][c] '''+''' 2.0 [[gtp]][c] '''+''' 0.06 [[asptrna]][c] '''+''' 0.028 [[tyrtrna]][c] '''=>''' 0.306 [[adp]][c] '''+''' 2.306 [[pi]][c] '''+''' 0.125 [[trnaala]][c] '''+''' 0.064 [[trnathr]][c] '''+''' 0.066 [[trnalys]][c] '''+''' 0.04 [[trnaarg]][c] '''+''' 2.0 [[gdp]][c] '''+''' 0.022 [[trnamet]][c] '''+''' 0.043 [[trnaile]][c] '''+''' 0.06 [[trnaasp]][c] '''+''' 0.084 [[trnagly]][c] '''+''' 0.011 [[trnacys]][c] '''+''' 0.006 [[trnatrp]][c] '''+''' 0.078 [[trnaleu]][c] '''+''' 0.001 [[PROT_LPL_v60]][c] '''+''' 0.06 [[trnaasn]][c] '''+''' 0.028 [[trnatyr]][c] '''+''' 2.306 [[h]][c] '''+''' 0.06 [[trnaval]][c] '''+''' 0.017 [[trnahis]][c] '''+''' 0.034 [[trnaphe]][c] '''+''' 0.04 [[trnapro]][c] '''+''' 0.106 [[trnaglu]][c] '''+''' 0.056 [[trnaser]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 2-Deoxy-D-ribose 1-phosphate[c] '''<=>''' 1.0 2-Deoxy-D-ribose 5-phosphate[c]
+
**
−
 
+
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[EF0185]]
 
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[map00030]]: [http://www.genome.jp/dbget-bin/www_bget?map00030 map00030]
 
−
** '''26''' reactions found over '''69''' reactions in the full pathway
 
−
* [[map00230]]: [http://www.genome.jp/dbget-bin/www_bget?map00230 map00230]
 
−
** '''98''' reactions found over '''298''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
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* Category: [[manual]]
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** [[pantograph]]:
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** Source: [[manual-1_new_rxn_for_biomass]]
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*** [[e_coli_sstr_k12_substr_mg1655]]
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*** Comment: [[reaction added for biomass, from model l.plantarum]]
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*** [[b_subtilis_subsp_subtilis_str168]]
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== External links  ==
 
== External links  ==
−
* RHEA:
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{{#set: direction=LEFT-TO-RIGHT}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25205 25205]
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{{#set: in pathway=}}
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* BioCyc : META:D-PPENTOMUT-RXN
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{{#set: reconstruction category=manual}}
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* MetaNetX (MNX) Equation : MNXR103116
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{{#set: reconstruction source=manual-1_new_rxn_for_biomass}}
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* KEGG Reaction : R02749
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{{#set: reconstruction comment=reaction added for biomass, from model l.plantarum}}
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* EC Number : 5.4.2.7
+
−
{{#set: direction=REVERSIBLE}}
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−
{{#set: common name=Phosphopentomutase 2 (deoxyribose)}}
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−
{{#set: gene associated=EF0185}}
+
−
{{#set: in pathway=map00030|map00230}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655|b_subtilis_subsp_subtilis_str168}}
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Latest revision as of 16:38, 21 March 2018

Reaction PROTS_LPL_v60

  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Pathways

Reconstruction information

External links

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