Difference between revisions of "PUNP6"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/CSPMDDH CSPMDDH] == * direction: ** LEFT-TO-RIGHT * common name: ** Carboxyspermidine dehydrogenase...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PUNP6 PUNP6] == * direction: ** REVERSIBLE * common name: ** Purine-nucleoside phosphorylase (Deoxy...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/CSPMDDH CSPMDDH] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/PUNP6 PUNP6] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** Carboxyspermidine dehydrogenase
+
** Purine-nucleoside phosphorylase (Deoxyinosine)
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[h]][c] '''+''' 1.0 [[aspsa]][c] '''+''' 1.0 [[ptrc]][c] '''+''' 1.0 [[nadph]][c] '''=>''' 1.0 [[cspmd]][c] '''+''' 1.0 [[nadp]][c] '''+''' 1.0 [[h2o]][c]
+
** 1.0 [[din]][c] '''+''' 1.0 [[pi]][c] '''<=>''' 1.0 [[hxan]][c] '''+''' 1.0 [[2dr1p]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 H+[c] '''+''' 1.0 L-Aspartate 4-semialdehyde[c] '''+''' 1.0 Putrescine[c] '''+''' 1.0 Nicotinamide adenine dinucleotide phosphate - reduced[c] '''=>''' 1.0 Carboxyspermidine[c] '''+''' 1.0 Nicotinamide adenine dinucleotide phosphate[c] '''+''' 1.0 H2O H2O[c]
+
** 1.0 Deoxyinosine[c] '''+''' 1.0 Phosphate[c] '''<=>''' 1.0 Hypoxanthine[c] '''+''' 1.0 2-Deoxy-D-ribose 1-phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[EF0186]]
 +
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
* Gene: [[EF0187]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 
== Pathways  ==
 
== Pathways  ==
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
** '''460''' reactions found over '''2349''' reactions in the full pathway
 
** '''460''' reactions found over '''2349''' reactions in the full pathway
−
* [[map00330]]: [http://www.genome.jp/dbget-bin/www_bget?map00330 map00330]
+
* [[map00240]]: [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240]
−
** '''22''' reactions found over '''149''' reactions in the full pathway
+
** '''82''' reactions found over '''244''' reactions in the full pathway
 +
* [[map00983]]: [http://www.genome.jp/dbget-bin/www_bget?map00983 map00983]
 +
** '''22''' reactions found over '''72''' reactions in the full pathway
 +
* [[map00230]]: [http://www.genome.jp/dbget-bin/www_bget?map00230 map00230]
 +
** '''97''' reactions found over '''298''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[gap-filling]]
+
* Category: [[orthology]]
−
** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
*** Tool: [[meneco]]
+
*** Tool: [[pantograph]]
−
**** Comment: [[added for gapfilling]]
+
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=34111 34111]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27750 27750]
−
* EC Number : 1.5.1.43
+
* BioCyc : META:DEOXYINOPHOSPHOR-RXN
−
* MetaNetX (MNX) Equation : MNXR96936
+
* MetaNetX (MNX) Equation : MNXR103348
−
* KEGG Reaction : R09079
+
* KEGG Reaction : R02748
−
* BioCyc : META:RXN-11566
+
* EC Number : 2.4.2.1
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: direction=REVERSIBLE}}
−
{{#set: common name=Carboxyspermidine dehydrogenase}}
+
{{#set: common name=Purine-nucleoside phosphorylase (Deoxyinosine)}}
−
{{#set: in pathway=map01100|map00330}}
+
{{#set: gene associated=EF0186|EF0187}}
−
{{#set: reconstruction category=gap-filling}}
+
{{#set: in pathway=map01100|map00240|map00983|map00230}}
−
{{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction tool=meneco}}
+
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168|orthology-l_plantarum_wcfs1}}
−
{{#set: reconstruction comment=added for gapfilling}}
+
{{#set: reconstruction tool=pantograph}}

Latest revision as of 16:39, 21 March 2018

Reaction PUNP6

  • direction:
    • REVERSIBLE
  • common name:
    • Purine-nucleoside phosphorylase (Deoxyinosine)
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Deoxyinosine[c] + 1.0 Phosphate[c] <=> 1.0 Hypoxanthine[c] + 1.0 2-Deoxy-D-ribose 1-phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:DEOXYINOPHOSPHOR-RXN
  • MetaNetX (MNX) Equation : MNXR103348
  • KEGG Reaction : R02748
  • EC Number : 2.4.2.1




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