Difference between revisions of "SERD L"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/ABUTD ABUTD] == * direction: ** LEFT-TO-RIGHT * common name: ** Aminobutyraldehyde dehydrogenase *...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/SERD_L SERD_L] == * direction: ** LEFT-TO-RIGHT * common name: ** L-serine deaminase * Synonym(s):...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/ABUTD ABUTD] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/SERD_L SERD_L] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Aminobutyraldehyde dehydrogenase
+
** L-serine deaminase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[nad]][c] '''+''' 1.0 [[h2o]][c] '''+''' 1.0 [[4abutn]][c] '''=>''' 1.0 [[4abut]][c] '''+''' 2.0 [[h]][c] '''+''' 1.0 [[nadh]][c]
+
** 1.0 [[ser__L]][c] '''=>''' 1.0 [[pyr]][c] '''+''' 1.0 [[nh4]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 Nicotinamide adenine dinucleotide[c] '''+''' 1.0 H2O H2O[c] '''+''' 1.0 4-Aminobutanal[c] '''=>''' 1.0 4-Aminobutanoate[c] '''+''' 2.0 H+[c] '''+''' 1.0 Nicotinamide adenine dinucleotide - reduced[c]
+
** 1.0 L-Serine[c] '''=>''' 1.0 Pyruvate[c] '''+''' 1.0 Ammonium[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF0253]]
+
* Gene: [[EF0099]]
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
+
** Source: [[orthology-l_plantarum_wcfs1]]
 +
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
* Gene: [[EF2722]]
 +
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
* Gene: [[EF0098]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
* Gene: [[EF2721]]
 +
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 
== Pathways  ==
 
== Pathways  ==
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
−
** '''508''' reactions found over '''2349''' reactions in the full pathway
+
** '''460''' reactions found over '''2349''' reactions in the full pathway
−
* [[map00310]]: [http://www.genome.jp/dbget-bin/www_bget?map00310 map00310]
+
−
** '''6''' reactions found over '''138''' reactions in the full pathway
+
−
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
+
−
** '''218''' reactions found over '''1054''' reactions in the full pathway
+
−
* [[map00561]]: [http://www.genome.jp/dbget-bin/www_bget?map00561 map00561]
+
−
** '''7''' reactions found over '''83''' reactions in the full pathway
+
−
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
+
−
** '''111''' reactions found over '''715''' reactions in the full pathway
+
−
* [[map00981]]: [http://www.genome.jp/dbget-bin/www_bget?map00981 map00981]
+
−
** '''2''' reactions found over '''18''' reactions in the full pathway
+
−
* [[map00330]]: [http://www.genome.jp/dbget-bin/www_bget?map00330 map00330]
+
−
** '''24''' reactions found over '''149''' reactions in the full pathway
+
−
* [[map00625]]: [http://www.genome.jp/dbget-bin/www_bget?map00625 map00625]
+
−
** '''3''' reactions found over '''25''' reactions in the full pathway
+
−
* [[map00903]]: [http://www.genome.jp/dbget-bin/www_bget?map00903 map00903]
+
−
** '''2''' reactions found over '''30''' reactions in the full pathway
+
−
* [[map00053]]: [http://www.genome.jp/dbget-bin/www_bget?map00053 map00053]
+
−
** '''7''' reactions found over '''50''' reactions in the full pathway
+
−
* [[map00410]]: [http://www.genome.jp/dbget-bin/www_bget?map00410 map00410]
+
−
** '''8''' reactions found over '''91''' reactions in the full pathway
+
−
* [[map00010]]: [http://www.genome.jp/dbget-bin/www_bget?map00010 map00010]
+
−
** '''24''' reactions found over '''149''' reactions in the full pathway
+
−
* [[map00620]]: [http://www.genome.jp/dbget-bin/www_bget?map00620 map00620]
+
−
** '''31''' reactions found over '''163''' reactions in the full pathway
+
−
* [[map00071]]: [http://www.genome.jp/dbget-bin/www_bget?map00071 map00071]
+
−
** '''3''' reactions found over '''167''' reactions in the full pathway
+
−
* [[map00340]]: [http://www.genome.jp/dbget-bin/www_bget?map00340 map00340]
+
−
** '''17''' reactions found over '''90''' reactions in the full pathway
+
−
* [[map00280]]: [http://www.genome.jp/dbget-bin/www_bget?map00280 map00280]
+
−
** '''9''' reactions found over '''155''' reactions in the full pathway
+
 
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
−
** '''156''' reactions found over '''694''' reactions in the full pathway
+
** '''135''' reactions found over '''694''' reactions in the full pathway
−
* [[map00380]]: [http://www.genome.jp/dbget-bin/www_bget?map00380 map00380]
+
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
−
** '''7''' reactions found over '''163''' reactions in the full pathway
+
** '''179''' reactions found over '''1054''' reactions in the full pathway
 +
* [[map00260]]: [http://www.genome.jp/dbget-bin/www_bget?map00260 map00260]
 +
** '''23''' reactions found over '''133''' reactions in the full pathway
 +
* [[map00290]]: [http://www.genome.jp/dbget-bin/www_bget?map00290 map00290]
 +
** '''9''' reactions found over '''49''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
*** [[b_subtilis_subsp_subtilis_str168]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19105 19105]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19169 19169]
−
* BioCyc : META:AMINOBUTDEHYDROG-RXN
+
* BioCyc : META:4.3.1.17-RXN
−
* MetaNetX (MNX) Equation : MNXR95191
+
* MetaNetX (MNX) Equation : MNXR104339
−
* KEGG Reaction : R02549
+
* KEGG Reaction : R00220
−
* EC Number : 1.2.1.-
+
* EC Number : 4.3.1.15
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Aminobutyraldehyde dehydrogenase}}
+
{{#set: common name=L-serine deaminase}}
−
{{#set: gene associated=EF0253}}
+
{{#set: gene associated=EF0099|EF2722|EF0098|EF2721}}
−
{{#set: in pathway=map01100|map00310|map01110|map00561|map01120|map00981|map00330|map00625|map00903|map00053|map00410|map00010|map00620|map00071|map00340|map00280|map01130|map00380}}
+
{{#set: in pathway=map01100|map01130|map01110|map00260|map00290}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168|orthology-l_plantarum_wcfs1}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=b_subtilis_subsp_subtilis_str168}}
 

Latest revision as of 16:38, 21 March 2018

Reaction SERD_L

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • L-serine deaminase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 L-Serine[c] => 1.0 Pyruvate[c] + 1.0 Ammonium[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:4.3.1.17-RXN
  • MetaNetX (MNX) Equation : MNXR104339
  • KEGG Reaction : R00220
  • EC Number : 4.3.1.15




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