Difference between revisions of "SERD L"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PPM2 PPM2] == * direction: ** REVERSIBLE * common name: ** Phosphopentomutase 2 (deoxyribose) * Syn...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/SERD_L SERD_L] == * direction: ** LEFT-TO-RIGHT * common name: ** L-serine deaminase * Synonym(s):...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/PPM2 PPM2] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/SERD_L SERD_L] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Phosphopentomutase 2 (deoxyribose)
+
** L-serine deaminase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[2dr1p]][c] '''<=>''' 1.0 [[2dr5p]][c]
+
** 1.0 [[ser__L]][c] '''=>''' 1.0 [[pyr]][c] '''+''' 1.0 [[nh4]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 2-Deoxy-D-ribose 1-phosphate[c] '''<=>''' 1.0 2-Deoxy-D-ribose 5-phosphate[c]
+
** 1.0 L-Serine[c] '''=>''' 1.0 Pyruvate[c] '''+''' 1.0 Ammonium[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF0185]]
+
* Gene: [[EF0099]]
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
+
** Source: [[orthology-l_plantarum_wcfs1]]
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
* Gene: [[EF2722]]
 +
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
* Gene: [[EF0098]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
* Gene: [[EF2721]]
 +
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[map00030]]: [http://www.genome.jp/dbget-bin/www_bget?map00030 map00030]
+
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
−
** '''26''' reactions found over '''69''' reactions in the full pathway
+
** '''460''' reactions found over '''2349''' reactions in the full pathway
−
* [[map00230]]: [http://www.genome.jp/dbget-bin/www_bget?map00230 map00230]
+
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
−
** '''97''' reactions found over '''298''' reactions in the full pathway
+
** '''135''' reactions found over '''694''' reactions in the full pathway
 +
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 +
** '''179''' reactions found over '''1054''' reactions in the full pathway
 +
* [[map00260]]: [http://www.genome.jp/dbget-bin/www_bget?map00260 map00260]
 +
** '''23''' reactions found over '''133''' reactions in the full pathway
 +
* [[map00290]]: [http://www.genome.jp/dbget-bin/www_bget?map00290 map00290]
 +
** '''9''' reactions found over '''49''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
Line 28: Line 41:
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25205 25205]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19169 19169]
−
* BioCyc : META:D-PPENTOMUT-RXN
+
* BioCyc : META:4.3.1.17-RXN
−
* MetaNetX (MNX) Equation : MNXR103116
+
* MetaNetX (MNX) Equation : MNXR104339
−
* KEGG Reaction : R02749
+
* KEGG Reaction : R00220
−
* EC Number : 5.4.2.7
+
* EC Number : 4.3.1.15
−
{{#set: direction=REVERSIBLE}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Phosphopentomutase 2 (deoxyribose)}}
+
{{#set: common name=L-serine deaminase}}
−
{{#set: gene associated=EF0185}}
+
{{#set: gene associated=EF0099|EF2722|EF0098|EF2721}}
−
{{#set: in pathway=map00030|map00230}}
+
{{#set: in pathway=map01100|map01130|map01110|map00260|map00290}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168}}
+
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168|orthology-l_plantarum_wcfs1}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}

Latest revision as of 16:38, 21 March 2018

Reaction SERD_L

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • L-serine deaminase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 L-Serine[c] => 1.0 Pyruvate[c] + 1.0 Ammonium[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:4.3.1.17-RXN
  • MetaNetX (MNX) Equation : MNXR104339
  • KEGG Reaction : R00220
  • EC Number : 4.3.1.15




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