Difference between revisions of "SPMDt3"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/HMPK1 HMPK1] == * direction: ** LEFT-TO-RIGHT * common name: ** Hydroxymethylpyrimidine kinase (ATP...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/SPMDt3 SPMDt3] == * direction: ** LEFT-TO-RIGHT * common name: ** Spermidine transport out via prot...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
== Reaction [http://bigg.ucsd.edu/universal/reactions/HMPK1 HMPK1] ==
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== Reaction [http://bigg.ucsd.edu/universal/reactions/SPMDt3 SPMDt3] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
** Hydroxymethylpyrimidine kinase (ATP)
+
** Spermidine transport out via proton antiport
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
** 1.0 [[4ahmmp]][c] '''+''' 1.0 [[atp]][c] '''=>''' 1.0 [[h]][c] '''+''' 1.0 [[adp]][c] '''+''' 1.0 [[4ampm]][c]
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** 1.0 [[h]][e] '''+''' 1.0 [[spmd]][c] '''=>''' 1.0 [[h]][c] '''+''' 1.0 [[spmd]][e]
 
* With common name(s):
 
* With common name(s):
** 1.0 4-Amino-5-hydroxymethyl-2-methylpyrimidine[c] '''+''' 1.0 ATP C10H12N5O13P3[c] '''=>''' 1.0 H+[c] '''+''' 1.0 ADP C10H12N5O10P2[c] '''+''' 1.0 4-Amino-2-methyl-5-phosphomethylpyrimidine[c]
+
** 1.0 H+[e] '''+''' 1.0 Spermidine[c] '''=>''' 1.0 H+[c] '''+''' 1.0 Spermidine[e]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
* [[EF0202]]
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* Gene: [[EF1078]]
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
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** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
* [[EF2775]]
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** [[pantograph]]-[[l_plantarum_wcfs1]]
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** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
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** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
+
 
== Pathways  ==
 
== Pathways  ==
* [[map00730]]: [http://www.genome.jp/dbget-bin/www_bget?map00730 map00730]
 
** '''11''' reactions found over '''24''' reactions in the full pathway
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
** '''460''' reactions found over '''2349''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* [[orthology]]:
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* Category: [[orthology]]
** [[pantograph]]:
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** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
*** [[e_coli_sstr_k12_substr_mg1655]]
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*** Tool: [[pantograph]]
*** [[l_plantarum_wcfs1]]
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* Category: [[manual]]
*** [[b_subtilis_subsp_subtilis_str168]]
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** Source: [[manual-curation_from_orthology]]
 
== External links  ==
 
== External links  ==
* RHEA:
 
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23096 23096]
 
* BioCyc : META:OHMETPYRKIN-RXN
 
* MetaNetX (MNX) Equation : MNXR100664
 
* KEGG Reaction : R03471
 
* EC Number : 2.7.1.49
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
{{#set: common name=Hydroxymethylpyrimidine kinase (ATP)}}
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{{#set: common name=Spermidine transport out via proton antiport}}
{{#set: gene associated=EF0202|EF2775}}
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{{#set: gene associated=EF1078}}
{{#set: in pathway=map00730|map01100}}
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{{#set: in pathway=}}
{{#set: reconstruction category=orthology}}
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{{#set: reconstruction category=orthology|manual}}
 +
{{#set: reconstruction source=manual-curation_from_orthology|orthology-b_subtilis_subsp_subtilis_str168}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655|l_plantarum_wcfs1|b_subtilis_subsp_subtilis_str168}}
 

Latest revision as of 16:46, 21 March 2018

Reaction SPMDt3

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Spermidine transport out via proton antiport
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 H+[e] + 1.0 Spermidine[c] => 1.0 H+[c] + 1.0 Spermidine[e]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links