Difference between revisions of "THDPS"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/THDPS THDPS] == * direction: ** LEFT-TO-RIGHT * common name: ** Tetrahydrodipicolinate succinylase...")
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
−
[[Category:Pathway]]
+
[[Category:Reaction]]
−
== Pathway [http://www.genome.jp/dbget-bin/www_bget?map00330 map00330] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/THDPS THDPS] ==
−
* common_name:
+
* direction:
−
** Arginine and proline metabolism
+
** LEFT-TO-RIGHT
 +
* common name:
 +
** Tetrahydrodipicolinate succinylase
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction(s) found ==
+
== Reaction Formula ==
−
'''22''' reactions found over '''149''' reactions in the full pathway
+
* With identifiers:
−
* [[ABUTD]]
+
** 1.0 [[thdp]][c] '''+''' 1.0 [[succoa]][c] '''+''' 1.0 [[h2o]][c] '''=>''' 1.0 [[coa]][c] '''+''' 1.0 [[sl2a6o]][c]
−
* [[ADMDC]]
+
* With common name(s):
−
* [[ASPTA]]
+
** 1.0 2,3,4,5-Tetrahydrodipicolinate[c] '''+''' 1.0 Succinyl-CoA[c] '''+''' 1.0 H2O H2O[c] '''=>''' 1.0 Coenzyme A[c] '''+''' 1.0 N-Succinyl-2-L-amino-6-oxoheptanedioate[c]
−
* [[CKc]]
+
 
−
* [[CRTNsyn]]
+
== Genes associated with this reaction  ==
−
* [[CSND]]
+
Genes have been associated with this reaction based on different elements listed below.
−
* [[CSPMDDC]]
+
* Gene: [[EF1133]]
−
* [[CSPMDDH]]
+
** Source: [[orthology-l_plantarum_wcfs1]]
−
* [[EHGLAT]]
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
* [[G5SD]]
+
== Pathways  ==
−
* [[GACMTRc]]
+
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
−
* [[GGGABAH]]
+
** '''460''' reactions found over '''2349''' reactions in the full pathway
−
* [[GLU5K]]
+
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
−
* [[GLYALDDr]]
+
** '''104''' reactions found over '''715''' reactions in the full pathway
−
* [[GLYAMDTRc]]
+
* [[map00300]]: [http://www.genome.jp/dbget-bin/www_bget?map00300 map00300]
−
* [[MCSNAH]]
+
** '''13''' reactions found over '''34''' reactions in the full pathway
−
* [[ORNDC]]
+
* [[map01230]]: [http://www.genome.jp/dbget-bin/www_bget?map01230 map01230]
−
* [[P5CR]]
+
** '''56''' reactions found over '''228''' reactions in the full pathway
−
* [[PTRCTA]]
+
== Reconstruction information  ==
−
* [[SPMDAT1]]
+
* Category: [[orthology]]
−
* [[SPMDAT2]]
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
* [[SPMS]]
+
*** Tool: [[pantograph]]
−
== Reaction(s) not found ==
+
** Source: [[orthology-l_plantarum_wcfs1]]
−
* [http://bigg.ucsd.edu/universal/reactions/3HXKYNOXDA 3HXKYNOXDA]
+
*** Tool: [[pantograph]]
−
* [http://bigg.ucsd.edu/universal/reactions/3MOXTYROX 3MOXTYROX]
+
−
* [http://bigg.ucsd.edu/universal/reactions/3SALATAi 3SALATAi]
+
−
* [http://bigg.ucsd.edu/universal/reactions/3SALATAim 3SALATAim]
+
−
* [http://bigg.ucsd.edu/universal/reactions/41R1H2MAE12BOOX 41R1H2MAE12BOOX]
+
−
* [http://bigg.ucsd.edu/universal/reactions/41R2A1H12BOOX 41R2A1H12BOOX]
+
−
* [http://bigg.ucsd.edu/universal/reactions/4ABUTD 4ABUTD]
+
−
* [http://bigg.ucsd.edu/universal/reactions/4HGLSD 4HGLSD]
+
−
* [http://bigg.ucsd.edu/universal/reactions/4HGLSDm 4HGLSDm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/5HOXINDACTOX 5HOXINDACTOX]
+
−
* [http://bigg.ucsd.edu/universal/reactions/5HOXINDACTOXm 5HOXINDACTOXm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/5HOXINOXDA 5HOXINOXDA]
+
−
* [http://bigg.ucsd.edu/universal/reactions/5HXKYNOXDA 5HXKYNOXDA]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AABHH AABHH]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AABTN AABTN]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AATC AATC]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AATG AATG]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AATGm AATGm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ABOR ABOR]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ABUTDm ABUTDm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AGDI AGDI]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AGDIn AGDIn]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AGMDA AGMDA]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AGMT AGMT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AGMTm AGMTm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ALATA_D ALATA_D]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ALDD20x ALDD20x]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ALDD20xm ALDD20xm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ALDH ALDH]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AMID AMID]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AMID2 AMID2]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AMID3 AMID3]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AMID4 AMID4]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AMID5 AMID5]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AMID_1 AMID_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AMPTASECG AMPTASECG]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AMPTASECGe AMPTASECGe]
+
−
* [http://bigg.ucsd.edu/universal/reactions/APAPTm APAPTm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/APCS APCS]
+
−
* [http://bigg.ucsd.edu/universal/reactions/APRTO2 APRTO2]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ARGDC ARGDC]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ARGDCm ARGDCm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ARGDCpp ARGDCpp]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ARGN ARGN]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ARGNm ARGNm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ARUH ARUH]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ASAPT ASAPT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ASPATh ASPATh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ASPTAm ASPTAm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ASPTAp ASPTAp]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AST AST]
+
−
* [http://bigg.ucsd.edu/universal/reactions/CK CK]
+
−
* [http://bigg.ucsd.edu/universal/reactions/CMPA CMPA]
+
−
* [http://bigg.ucsd.edu/universal/reactions/CRTNh CRTNh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/DALAOX DALAOX]
+
−
* [http://bigg.ucsd.edu/universal/reactions/DALAOXx DALAOXx]
+
−
* [http://bigg.ucsd.edu/universal/reactions/DARGOp DARGOp]
+
−
* [http://bigg.ucsd.edu/universal/reactions/DDMCITALOR DDMCITALOR]
+
−
* [http://bigg.ucsd.edu/universal/reactions/DIAT DIAT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/DMCITALOR DMCITALOR]
+
−
* [http://bigg.ucsd.edu/universal/reactions/DORNOp DORNOp]
+
−
* [http://bigg.ucsd.edu/universal/reactions/DPROOp DPROOp]
+
−
* [http://bigg.ucsd.edu/universal/reactions/EHGLATm EHGLATm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/EHGLATp EHGLATp]
+
−
* [http://bigg.ucsd.edu/universal/reactions/G5DHx G5DHx]
+
−
* [http://bigg.ucsd.edu/universal/reactions/G5SADrm G5SADrm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/G5SADs G5SADs]
+
−
* [http://bigg.ucsd.edu/universal/reactions/G5SD2 G5SD2]
+
−
* [http://bigg.ucsd.edu/universal/reactions/G5SDym G5SDym]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GDBTALDH GDBTALDH]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GGGABADr GGGABADr]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GGPTRCS GGPTRCS]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLACO GLACO]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLACOm GLACOm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLU5Km GLU5Km]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLYOp GLYOp]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GUDBUTNAH GUDBUTNAH]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HPROa HPROa]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HPROb HPROb]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HPROx HPROx]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HPROxm HPROxm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HPROym HPROym]
+
−
* [http://bigg.ucsd.edu/universal/reactions/IMACTD IMACTD]
+
−
* [http://bigg.ucsd.edu/universal/reactions/IMACTD_m IMACTD_m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/LALGP LALGP]
+
−
* [http://bigg.ucsd.edu/universal/reactions/LCYSTAT LCYSTAT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/LCYSTATm LCYSTATm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MAOLNOR MAOLNOR]
+
−
* [http://bigg.ucsd.edu/universal/reactions/NABTNO NABTNO]
+
−
* [http://bigg.ucsd.edu/universal/reactions/NABTNOm NABTNOm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/NOPD NOPD]
+
−
* [http://bigg.ucsd.edu/universal/reactions/NOS NOS]
+
−
* [http://bigg.ucsd.edu/universal/reactions/NOS1 NOS1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/NOS2 NOS2]
+
−
* [http://bigg.ucsd.edu/universal/reactions/NOS2_1 NOS2_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/OARGDC OARGDC]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ORDCh ORDCh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ORNCD ORNCD]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ORNTA ORNTA]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ORNTArm ORNTArm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/P5CD P5CD]
+
−
* [http://bigg.ucsd.edu/universal/reactions/P5CDm P5CDm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/P5CRm P5CRm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/P5CRx P5CRx]
+
−
* [http://bigg.ucsd.edu/universal/reactions/P5CRxm P5CRxm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PHCD PHCD]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PHCDm PHCDm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PHCHGS PHCHGS]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PHCHGSm PHCHGSm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/POLYAO2 POLYAO2]
+
−
* [http://bigg.ucsd.edu/universal/reactions/POLYAO3 POLYAO3]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PRO1x PRO1x]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PRO1xm PRO1xm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PRO1y PRO1y]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PROAKGOX1 PROAKGOX1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PROAKGOX1r PROAKGOX1r]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PROD2 PROD2]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PROD2m PROD2m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PTRCAT1 PTRCAT1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PUTA3 PUTA3]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PYLALDOX PYLALDOX]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PYLALDOXm PYLALDOXm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SADH SADH]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SGDS SGDS]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SGSAD SGSAD]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SOTA SOTA]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SPRMS SPRMS]
+
 
== External links  ==
 
== External links  ==
−
{{#set: common_name=Arginine and proline metabolism}}
+
* RHEA:
−
{{#set: reaction found=22}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17325 17325]
−
{{#set: reaction not found=149}}
+
* BioCyc : META:TETHYDPICSUCC-RXN
−
{{#set: completion rate=15.0}}
+
* MetaNetX (MNX) Equation : MNXR104806
 +
* KEGG Reaction : R04365
 +
* EC Number : 2.3.1.117
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=Tetrahydrodipicolinate succinylase}}
 +
{{#set: gene associated=EF1133}}
 +
{{#set: in pathway=map01100|map01120|map00300|map01230}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-l_plantarum_wcfs1}}
 +
{{#set: reconstruction tool=pantograph}}

Latest revision as of 16:06, 21 March 2018

Reaction THDPS

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Tetrahydrodipicolinate succinylase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 2,3,4,5-Tetrahydrodipicolinate[c] + 1.0 Succinyl-CoA[c] + 1.0 H2O H2O[c] => 1.0 Coenzyme A[c] + 1.0 N-Succinyl-2-L-amino-6-oxoheptanedioate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:TETHYDPICSUCC-RXN
  • MetaNetX (MNX) Equation : MNXR104806
  • KEGG Reaction : R04365
  • EC Number : 2.3.1.117




Retrieved from "http://gem-aureme.irisa.fr/efaecV583/index.php?title=THDPS&oldid=8524"