Difference between revisions of "TransportSeed paps"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/SPMDOX SPMDOX] == * direction: ** LEFT-TO-RIGHT * common name: ** Spermidine:(acceptor) oxidoreduct...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PNP PNP] == * direction: ** REVERSIBLE * common name: ** Purine nucleoside phosphorylase * Synonym(...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
== Reaction [http://bigg.ucsd.edu/universal/reactions/SPMDOX SPMDOX] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/PNP PNP] ==
 
* direction:
 
* direction:
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
** Spermidine:(acceptor) oxidoreductase
+
** Purine nucleoside phosphorylase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
** 1.0 [[o2]][c] '''+''' 1.0 [[h2o]][c] '''+''' 1.0 [[spmd]][c] '''=>''' 1.0 [[4abutn]][c] '''+''' 1.0 [[h2o2]][c] '''+''' 1.0 [[13dampp]][c]
+
** 1.0 [[pi]][c] '''+''' 1.0 [[rnam]][c] '''<=>''' 1.0 [[h]][c] '''+''' 1.0 [[r1p]][c] '''+''' 1.0 [[ncam]][c]
 
* With common name(s):
 
* With common name(s):
** 1.0 O2 O2[c] '''+''' 1.0 H2O H2O[c] '''+''' 1.0 Spermidine[c] '''=>''' 1.0 4-Aminobutanal[c] '''+''' 1.0 Hydrogen peroxide[c] '''+''' 1.0 1 3 Diaminopropane C3H12N2[c]
+
** 1.0 Phosphate[c] '''+''' 1.0 N Ribosylnicotinamide C11H15N2O5[c] '''<=>''' 1.0 H+[c] '''+''' 1.0 Alpha-D-Ribose 1-phosphate[c] '''+''' 1.0 Nicotinamide[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* [[EF0187]]
 +
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 +
* [[EF0186]]
 +
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[map00240]]: [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240]
 +
** '''82''' reactions found over '''244''' reactions in the full pathway
 +
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 +
** '''460''' reactions found over '''2349''' reactions in the full pathway
 +
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 +
** '''179''' reactions found over '''1054''' reactions in the full pathway
 +
* [[map00230]]: [http://www.genome.jp/dbget-bin/www_bget?map00230 map00230]
 +
** '''97''' reactions found over '''298''' reactions in the full pathway
 +
* [[map00760]]: [http://www.genome.jp/dbget-bin/www_bget?map00760 map00760]
 +
** '''19''' reactions found over '''97''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* [[gap-filling]]:
+
* Category: [[orthology]]
** [[meneco]]:
+
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
*** [[added for gapfilling]]
+
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
* MetaNetX (MNX) Equation : MNXR104481
+
* BioCyc : META:RXN0-7092
{{#set: direction=LEFT-TO-RIGHT}}
+
* MetaNetX (MNX) Equation : MNXR103048
{{#set: common name=Spermidine:(acceptor) oxidoreductase}}
+
* KEGG Reaction : R02294
{{#set: in pathway=}}
+
* EC Number : 2.4.2
{{#set: reconstruction category=gap-filling}}
+
{{#set: direction=REVERSIBLE}}
{{#set: reconstruction tool=meneco}}
+
{{#set: common name=Purine nucleoside phosphorylase}}
{{#set: reconstruction source=added for gapfilling}}
+
{{#set: gene associated=EF0187|EF0186}}
 +
{{#set: in pathway=map00240|map01100|map01110|map00230|map00760}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-b_subtilis_subsp_subtilis_str168}}
 +
{{#set: reconstruction tool=pantograph}}

Revision as of 19:45, 18 March 2018

Reaction PNP

  • direction:
    • REVERSIBLE
  • common name:
    • Purine nucleoside phosphorylase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Phosphate[c] + 1.0 N Ribosylnicotinamide C11H15N2O5[c] <=> 1.0 H+[c] + 1.0 Alpha-D-Ribose 1-phosphate[c] + 1.0 Nicotinamide[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • BioCyc : META:RXN0-7092
  • MetaNetX (MNX) Equation : MNXR103048
  • KEGG Reaction : R02294
  • EC Number : 2.4.2