Difference between revisions of "UGMDDS"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PTAr PTAr] == * direction: ** REVERSIBLE * common name: ** Phosphotransacetylase * Synonym(s): ==...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/E4PD E4PD] == * direction: ** REVERSIBLE * common name: ** Erythrose 4-phosphate dehydrogenase * Sy...")
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/PTAr PTAr] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/E4PD E4PD] ==
 
* direction:
 
* direction:
 
** REVERSIBLE
 
** REVERSIBLE
 
* common name:
 
* common name:
−
** Phosphotransacetylase
+
** Erythrose 4-phosphate dehydrogenase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[accoa]][c] '''+''' 1.0 [[pi]][c] '''<=>''' 1.0 [[actp]][c] '''+''' 1.0 [[coa]][c]
+
** 1.0 [[h2o]][c] '''+''' 1.0 [[e4p]][c] '''+''' 1.0 [[nad]][c] '''<=>''' 1.0 [[nadh]][c] '''+''' 2.0 [[h]][c] '''+''' 1.0 [[4per]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 Acetyl-CoA[c] '''+''' 1.0 Phosphate[c] '''<=>''' 1.0 Acetyl phosphate[c] '''+''' 1.0 Coenzyme A[c]
+
** 1.0 H2O H2O[c] '''+''' 1.0 D-Erythrose 4-phosphate[c] '''+''' 1.0 Nicotinamide adenine dinucleotide[c] '''<=>''' 1.0 Nicotinamide adenine dinucleotide - reduced[c] '''+''' 2.0 H+[c] '''+''' 1.0 4-Phospho-D-erythronate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF0949]]
+
* [[EF1964]]
−
** [[pantograph]]-[[l_plantarum_wcfs1]]
+
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 +
* [[EF1526]]
 
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 
 
== Pathways  ==
 
== Pathways  ==
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
−
** '''508''' reactions found over '''2349''' reactions in the full pathway
+
** '''460''' reactions found over '''2349''' reactions in the full pathway
−
* [[map00720]]: [http://www.genome.jp/dbget-bin/www_bget?map00720 map00720]
+
* [[map00750]]: [http://www.genome.jp/dbget-bin/www_bget?map00750 map00750]
−
** '''17''' reactions found over '''157''' reactions in the full pathway
+
** '''2''' reactions found over '''25''' reactions in the full pathway
−
* [[map00640]]: [http://www.genome.jp/dbget-bin/www_bget?map00640 map00640]
+
−
** '''15''' reactions found over '''143''' reactions in the full pathway
+
−
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
+
−
** '''111''' reactions found over '''715''' reactions in the full pathway
+
−
* [[map00430]]: [http://www.genome.jp/dbget-bin/www_bget?map00430 map00430]
+
−
** '''5''' reactions found over '''24''' reactions in the full pathway
+
−
* [[map01200]]: [http://www.genome.jp/dbget-bin/www_bget?map01200 map01200]
+
−
** '''50''' reactions found over '''220''' reactions in the full pathway
+
−
* [[map00620]]: [http://www.genome.jp/dbget-bin/www_bget?map00620 map00620]
+
−
** '''31''' reactions found over '''163''' reactions in the full pathway
+
−
* [[map00680]]: [http://www.genome.jp/dbget-bin/www_bget?map00680 map00680]
+
−
** '''18''' reactions found over '''75''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* [[orthology]]:
 
* [[orthology]]:
 
** [[pantograph]]:
 
** [[pantograph]]:
 
*** [[e_coli_sstr_k12_substr_mg1655]]
 
*** [[e_coli_sstr_k12_substr_mg1655]]
−
*** [[l_plantarum_wcfs1]]
 
−
*** [[b_subtilis_subsp_subtilis_str168]]
 
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19521 19521]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12056 12056]
−
* BioCyc : META:PHOSACETYLTRANS-RXN
+
* BioCyc : META:ERYTH4PDEHYDROG-RXN
−
* MetaNetX (MNX) Equation : MNXR103319
+
* MetaNetX (MNX) Equation : MNXR97842
−
* KEGG Reaction : R00230
+
* KEGG Reaction : R01825
−
* EC Number : 2.3.1.8
+
* EC Number : 1.2.1.72
 
{{#set: direction=REVERSIBLE}}
 
{{#set: direction=REVERSIBLE}}
−
{{#set: common name=Phosphotransacetylase}}
+
{{#set: common name=Erythrose 4-phosphate dehydrogenase}}
−
{{#set: gene associated=EF0949}}
+
{{#set: gene associated=EF1964|EF1526}}
−
{{#set: in pathway=map01100|map00720|map00640|map01120|map00430|map01200|map00620|map00680}}
+
{{#set: in pathway=map01100|map00750}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655|l_plantarum_wcfs1|b_subtilis_subsp_subtilis_str168}}
+
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655}}

Revision as of 17:18, 10 January 2018

Reaction E4PD

  • direction:
    • REVERSIBLE
  • common name:
    • Erythrose 4-phosphate dehydrogenase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 H2O H2O[c] + 1.0 D-Erythrose 4-phosphate[c] + 1.0 Nicotinamide adenine dinucleotide[c] <=> 1.0 Nicotinamide adenine dinucleotide - reduced[c] + 2.0 H+[c] + 1.0 4-Phospho-D-erythronate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:ERYTH4PDEHYDROG-RXN
  • MetaNetX (MNX) Equation : MNXR97842
  • KEGG Reaction : R01825
  • EC Number : 1.2.1.72




Retrieved from "http://gem-aureme.irisa.fr/efaecV583/index.php?title=UGMDDS&oldid=5567"