Difference between revisions of "UGMDDS"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/CDPMEK CDPMEK] == * direction: ** LEFT-TO-RIGHT * common name: ** 4-(cytidine 5'-diphospho)-2-C-met...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/UGMDDS UGMDDS] == * direction: ** LEFT-TO-RIGHT * common name: ** UDP-N-acetylmuramoyl-L-alanyl-D-g...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/CDPMEK CDPMEK] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/UGMDDS UGMDDS] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase
+
** UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine synthetase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[atp]][c] '''+''' 1.0 [[4c2me]][c] '''=>''' 1.0 [[h]][c] '''+''' 1.0 [[2p4c2me]][c] '''+''' 1.0 [[adp]][c]
+
** 1.0 [[ugmd]][c] '''+''' 1.0 [[atp]][c] '''+''' 1.0 [[alaala]][c] '''=>''' 1.0 [[pi]][c] '''+''' 1.0 [[adp]][c] '''+''' 1.0 [[ugmda]][c] '''+''' 1.0 [[h]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 ATP C10H12N5O13P3[c] '''+''' 1.0 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol[c] '''=>''' 1.0 H+[c] '''+''' 1.0 2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol[c] '''+''' 1.0 ADP C10H12N5O10P2[c]
+
** 1.0 UDP-N-acetylmuramoyl-L-alanyl-D-gamma-glutamyl-meso-2,6-diaminopimelate[c] '''+''' 1.0 ATP C10H12N5O13P3[c] '''+''' 1.0 D-Alanyl-D-alanine[c] '''=>''' 1.0 Phosphate[c] '''+''' 1.0 ADP C10H12N5O10P2[c] '''+''' 1.0 UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine[c] '''+''' 1.0 H+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF0051]]
+
* Gene: [[EF0845]]
−
** [[pantograph]]-[[l_plantarum_wcfs1]]
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
+
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
+
 
== Pathways  ==
 
== Pathways  ==
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
** '''460''' reactions found over '''2349''' reactions in the full pathway
 
** '''460''' reactions found over '''2349''' reactions in the full pathway
−
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
+
* [[map00550]]: [http://www.genome.jp/dbget-bin/www_bget?map00550 map00550]
−
** '''135''' reactions found over '''694''' reactions in the full pathway
+
** '''10''' reactions found over '''27''' reactions in the full pathway
−
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
+
* [[map00300]]: [http://www.genome.jp/dbget-bin/www_bget?map00300 map00300]
−
** '''179''' reactions found over '''1054''' reactions in the full pathway
+
** '''13''' reactions found over '''34''' reactions in the full pathway
−
* [[map00900]]: [http://www.genome.jp/dbget-bin/www_bget?map00900 map00900]
+
−
** '''14''' reactions found over '''67''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
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*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-l_plantarum_wcfs1]]
 
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* MetaNetX (MNX) Equation : MNXR105094
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18437 18437]
+
* EC Number : 6.3.2.10
−
* BioCyc : META:2.7.1.148-RXN
+
−
* MetaNetX (MNX) Equation : MNXR96558
+
−
* KEGG Reaction : R05634
+
−
* EC Number : 2.7.1.148
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase}}
+
{{#set: common name=UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine synthetase}}
−
{{#set: gene associated=EF0051}}
+
{{#set: gene associated=EF0845}}
−
{{#set: in pathway=map01100|map01130|map01110|map00900}}
+
{{#set: in pathway=map01100|map00550|map00300}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168|orthology-l_plantarum_wcfs1}}
+
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}

Latest revision as of 16:45, 21 March 2018

Reaction UGMDDS

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine synthetase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 UDP-N-acetylmuramoyl-L-alanyl-D-gamma-glutamyl-meso-2,6-diaminopimelate[c] + 1.0 ATP C10H12N5O13P3[c] + 1.0 D-Alanyl-D-alanine[c] => 1.0 Phosphate[c] + 1.0 ADP C10H12N5O10P2[c] + 1.0 UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine[c] + 1.0 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • MetaNetX (MNX) Equation : MNXR105094
  • EC Number : 6.3.2.10




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