Difference between revisions of "Main Page"
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(Created page with "== sjapGEM description == == Automatic reconstruction with [http://aureme.genouest.org AuReMe] == Model summary: summary Download '''AuReMe''' Input/Out...") |
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** Download this [[MEDIA:Reaction_creator.csv|form]] | ** Download this [[MEDIA:Reaction_creator.csv|form]] | ||
* '''Follow the examples given in the form(s) to correctly share your suggestions''' | * '''Follow the examples given in the form(s) to correctly share your suggestions''' | ||
| − | * Send the filled form(s) to: | + | * Send the filled form(s) to: gabriel.markov@sb-roscoff.fr |
Revision as of 17:06, 9 January 2019
sjapGEM description
Automatic reconstruction with AuReMe
Model summary: summary
Download AuReMe Input/Output [LINK OR MEDIA data]
The automatic reconstruction of Saccharina_Japonica results to a Genome scale Model containing 3639 reactions, 3405 metabolites, 5023 genes and 1383 pathways. This GeM was obtained based on the following sources:
- Based on annotation data:
- Tool: Pathway tools
- Creation of a metabolic network containing 2892 reactions
- Tool: Pathway tools
- Based on orthology data:
- Tool: Pantograph
- From template NANNOCHLOROPSIS_SALINA creation of a metabolic network containing: 595 reactions
- From template ARABIDOPSIS_THALIANA creation of a metabolic network containing: 425 reactions
- From template ECTOCARPUS_SILICULOSUS creation of a metabolic network containing: 1498 reactions
- Tool: Pantograph
- Based on expertise:
- 57 reaction(s) added
- Based on gap-filling:
- Tool: meneco
- 88 reaction(s) added
- Tool: meneco
