Difference between revisions of "RXN-14025"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14025 RXN-14025] == * direction: ** LEFT-TO-RIGHT * common name: ** 5'-nucleotidase ** UMP phos...")
 
 
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* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** 5'-nucleotidase
 
−
** UMP phosphatase
 
 
* ec number:
 
* ec number:
 
** [http://enzyme.expasy.org/EC/3.1.3.5 EC-3.1.3.5]
 
** [http://enzyme.expasy.org/EC/3.1.3.5 EC-3.1.3.5]
 +
* common name:
 +
** UMP phosphatase
 +
** 5'-nucleotidase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[WATER]][c] '''+''' 1 [[UMP]][c] '''=>''' 1 [[URIDINE]][c] '''+''' 1 [[Pi]][c]
+
** 1 [[UMP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[URIDINE]][c] '''+''' 1 [[Pi]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H2O[c] '''+''' 1 UMP[c] '''=>''' 1 uridine[c] '''+''' 1 phosphate[c]
+
** 1 UMP[c] '''+''' 1 H2O[c] '''=>''' 1 uridine[c] '''+''' 1 phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[SJ18895]]
+
* Gene: [[SJ16098]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 
* Gene: [[SJ09030]]
 
* Gene: [[SJ09030]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
−
* Gene: [[SJ16098]]
+
* Gene: [[SJ15366]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
* Gene: [[SJ15366]]
+
* Gene: [[SJ18895]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
** Source: [[orthology-ectocarpus_siliculosus]]
 
 
* Gene: [[SJ18402]]
 
* Gene: [[SJ18402]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
Line 37: Line 37:
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7185]], UTP and CTP dephosphorylation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7185 PWY-7185]
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
 
* [[PWY-7821]], tunicamycin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7821 PWY-7821]
 
* [[PWY-7821]], tunicamycin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7821 PWY-7821]
 
** '''2''' reactions found over '''9''' reactions in the full pathway
 
** '''2''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7185]], UTP and CTP dephosphorylation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7185 PWY-7185]
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=29360 29360]
 
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=29360 29360]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=5'-nucleotidase}}
 
−
{{#set: common name=UMP phosphatase}}
 
 
{{#set: ec number=EC-3.1.3.5}}
 
{{#set: ec number=EC-3.1.3.5}}
−
{{#set: gene associated=SJ18895|SJ09030|SJ16098|SJ15366|SJ18402}}
+
{{#set: common name=UMP phosphatase}}
−
{{#set: in pathway=PWY-7185|PWY-7821}}
+
{{#set: common name=5'-nucleotidase}}
 +
{{#set: gene associated=SJ16098|SJ09030|SJ15366|SJ18895|SJ18402}}
 +
{{#set: in pathway=PWY-7821|PWY-7185}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction source=orthology-ectocarpus_siliculosus|annotation-saccharina_japonica_genome}}
 
{{#set: reconstruction source=orthology-ectocarpus_siliculosus|annotation-saccharina_japonica_genome}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 11:01, 10 January 2019

Reaction RXN-14025

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • common name:
    • UMP phosphatase
    • 5'-nucleotidase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 UMP[c] + 1 H2O[c] => 1 uridine[c] + 1 phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7821, tunicamycin biosynthesis: PWY-7821
    • 2 reactions found over 9 reactions in the full pathway
  • PWY-7185, UTP and CTP dephosphorylation I: PWY-7185
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/sjapgem/index.php?title=RXN-14025&oldid=14397"