Difference between revisions of "RXN1F-151"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-151 RXN1F-151] == * direction: ** LEFT-TO-RIGHT * common name: ** γ-carotene β-cyc...")
 
 
Line 3: Line 3:
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** γ-carotene β-cyclase
 
 
* ec number:
 
* ec number:
 
** [http://enzyme.expasy.org/EC/5.5.1.19 EC-5.5.1.19]
 
** [http://enzyme.expasy.org/EC/5.5.1.19 EC-5.5.1.19]
 +
* common name:
 +
** γ-carotene β-cyclase
 
* Synonym(s):
 
* Synonym(s):
  
Line 13: Line 13:
 
** 1 [[CPD1F-126]][c] '''=>''' 1 [[CPD1F-129]][c]
 
** 1 [[CPD1F-126]][c] '''=>''' 1 [[CPD1F-129]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 γ-carotene[c] '''=>''' 1 all-trans-β-carotene[c]
+
** 1 γ-carotene[c] '''=>''' 1 β-carotene[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
Line 20: Line 20:
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
** Source: [[orthology-ectocarpus_siliculosus]]
 
 
** Source: [[orthology-nannochloropsis_salina]]
 
** Source: [[orthology-nannochloropsis_salina]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-arabidopsis_thaliana]]
−
* Gene: [[SJ11349]]
+
** Source: [[orthology-ectocarpus_siliculosus]]
−
** Source: [[orthology-arabidopsis_thaliana]]
+
 
* Gene: [[SJ05110]]
 
* Gene: [[SJ05110]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
* Gene: [[SJ05072]]
+
* Gene: [[SJ11355]]
−
** Source: [[orthology-ectocarpus_siliculosus]]
+
** Source: [[orthology-arabidopsis_thaliana]]
 +
* Gene: [[SJ11348]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 
* Gene: [[SJ09087]]
 
* Gene: [[SJ09087]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-arabidopsis_thaliana]]
−
* Gene: [[SJ11348]]
+
* Gene: [[SJ11349]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-arabidopsis_thaliana]]
−
* Gene: [[SJ11355]]
+
* Gene: [[SJ05072]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-7938]], isorenieratene biosynthesis I (actinobacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7938 PWY-7938]
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 
* [[PWY-5943]], β-carotene biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5943 PWY-5943]
 
* [[PWY-5943]], β-carotene biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5943 PWY-5943]
 
** '''2''' reactions found over '''2''' reactions in the full pathway
 
** '''2''' reactions found over '''2''' reactions in the full pathway
Line 42: Line 44:
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-arabidopsis_thaliana]]
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-ectocarpus_siliculosus]]
 
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
** Source: [[orthology-nannochloropsis_salina]]
 
** Source: [[orthology-nannochloropsis_salina]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
Line 56: Line 58:
 
** [http://www.genome.jp/dbget-bin/www_bget?R03824 R03824]
 
** [http://www.genome.jp/dbget-bin/www_bget?R03824 R03824]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=γ-carotene β-cyclase}}
 
 
{{#set: ec number=EC-5.5.1.19}}
 
{{#set: ec number=EC-5.5.1.19}}
−
{{#set: gene associated=SJ04962|SJ11349|SJ05110|SJ05072|SJ09087|SJ11348|SJ11355}}
+
{{#set: common name=γ-carotene β-cyclase}}
−
{{#set: in pathway=PWY-5943}}
+
{{#set: gene associated=SJ04962|SJ05110|SJ11355|SJ11348|SJ09087|SJ11349|SJ05072}}
 +
{{#set: in pathway=PWY-7938|PWY-5943}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction source=orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus|orthology-nannochloropsis_salina|annotation-saccharina_japonica_genome}}
+
{{#set: reconstruction source=orthology-arabidopsis_thaliana|annotation-saccharina_japonica_genome|orthology-nannochloropsis_salina|orthology-ectocarpus_siliculosus}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 11:25, 10 January 2019

Reaction RXN1F-151

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • common name:
    • γ-carotene β-cyclase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 γ-carotene[c] => 1 β-carotene[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7938, isorenieratene biosynthesis I (actinobacteria): PWY-7938
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-5943, β-carotene biosynthesis: PWY-5943
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/sjapgem/index.php?title=RXN1F-151&oldid=15150"