Difference between revisions of "PWY-6142"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6142 PWY-6142] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-21...")
 
 
Line 9: Line 9:
  
 
== Reaction(s) found ==
 
== Reaction(s) found ==
−
  '''10''' reactions found over '''14''' reactions in the full pathway
+
  '''10''' reactions found over '''15''' reactions in the full pathway
 
* [[2PGADEHYDRAT-RXN]]
 
* [[2PGADEHYDRAT-RXN]]
 
** 3 associated gene(s):
 
** 3 associated gene(s):
−
*** [[SJ13450]]
 
 
*** [[SJ08386]]
 
*** [[SJ08386]]
 
*** [[SJ17529]]
 
*** [[SJ17529]]
 +
*** [[SJ13450]]
 
** 4 reconstruction source(s) associated:
 
** 4 reconstruction source(s) associated:
 
*** [[orthology-arabidopsis_thaliana]]
 
*** [[orthology-arabidopsis_thaliana]]
 +
*** [[annotation-saccharina_japonica_genome]]
 +
*** [[orthology-nannochloropsis_salina]]
 
*** [[orthology-ectocarpus_siliculosus]]
 
*** [[orthology-ectocarpus_siliculosus]]
−
*** [[orthology-nannochloropsis_salina]]
 
−
*** [[annotation-saccharina_japonica_genome]]
 
 
* [[3PGAREARR-RXN]]
 
* [[3PGAREARR-RXN]]
 
** 12 associated gene(s):
 
** 12 associated gene(s):
−
*** [[SJ21685]]
 
 
*** [[SJ16156]]
 
*** [[SJ16156]]
−
*** [[SJ12299]]
 
−
*** [[SJ14916]]
 
 
*** [[SJ21024]]
 
*** [[SJ21024]]
−
*** [[SJ09590]]
 
−
*** [[SJ12497]]
 
−
*** [[SJ15529]]
 
−
*** [[SJ13678]]
 
 
*** [[SJ01345]]
 
*** [[SJ01345]]
 +
*** [[SJ09590]]
 
*** [[SJ14984]]
 
*** [[SJ14984]]
 +
*** [[SJ13678]]
 +
*** [[SJ14916]]
 +
*** [[SJ15529]]
 +
*** [[SJ21685]]
 
*** [[SJ14704]]
 
*** [[SJ14704]]
 +
*** [[SJ12497]]
 +
*** [[SJ12299]]
 
** 4 reconstruction source(s) associated:
 
** 4 reconstruction source(s) associated:
 
*** [[orthology-arabidopsis_thaliana]]
 
*** [[orthology-arabidopsis_thaliana]]
−
*** [[orthology-ectocarpus_siliculosus]]
 
−
*** [[orthology-nannochloropsis_salina]]
 
 
*** [[annotation-saccharina_japonica_genome]]
 
*** [[annotation-saccharina_japonica_genome]]
 +
*** [[orthology-nannochloropsis_salina]]
 +
*** [[orthology-ectocarpus_siliculosus]]
 
* [[F16ALDOLASE-RXN]]
 
* [[F16ALDOLASE-RXN]]
 
** 5 associated gene(s):
 
** 5 associated gene(s):
−
*** [[SJ21513]]
 
 
*** [[SJ22520]]
 
*** [[SJ22520]]
 
*** [[SJ12479]]
 
*** [[SJ12479]]
−
*** [[SJ17964]]
 
 
*** [[SJ13560]]
 
*** [[SJ13560]]
 +
*** [[SJ17964]]
 +
*** [[SJ21513]]
 
** 3 reconstruction source(s) associated:
 
** 3 reconstruction source(s) associated:
−
*** [[orthology-ectocarpus_siliculosus]]
 
−
*** [[orthology-nannochloropsis_salina]]
 
 
*** [[annotation-saccharina_japonica_genome]]
 
*** [[annotation-saccharina_japonica_genome]]
 +
*** [[orthology-nannochloropsis_salina]]
 +
*** [[orthology-ectocarpus_siliculosus]]
 
* [[PEPCARBOX-RXN]]
 
* [[PEPCARBOX-RXN]]
 
** 1 associated gene(s):
 
** 1 associated gene(s):
 
*** [[SJ04004]]
 
*** [[SJ04004]]
 
** 2 reconstruction source(s) associated:
 
** 2 reconstruction source(s) associated:
 +
*** [[annotation-saccharina_japonica_genome]]
 
*** [[orthology-ectocarpus_siliculosus]]
 
*** [[orthology-ectocarpus_siliculosus]]
−
*** [[annotation-saccharina_japonica_genome]]
 
 
* [[PEPDEPHOS-RXN]]
 
* [[PEPDEPHOS-RXN]]
 
** 4 associated gene(s):
 
** 4 associated gene(s):
 +
*** [[SJ18193]]
 +
*** [[SJ17585]]
 
*** [[SJ18192]]
 
*** [[SJ18192]]
−
*** [[SJ18193]]
 
 
*** [[SJ13451]]
 
*** [[SJ13451]]
−
*** [[SJ17585]]
 
 
** 4 reconstruction source(s) associated:
 
** 4 reconstruction source(s) associated:
 
*** [[orthology-arabidopsis_thaliana]]
 
*** [[orthology-arabidopsis_thaliana]]
−
*** [[orthology-ectocarpus_siliculosus]]
 
−
*** [[orthology-nannochloropsis_salina]]
 
 
*** [[annotation-saccharina_japonica_genome]]
 
*** [[annotation-saccharina_japonica_genome]]
 +
*** [[orthology-nannochloropsis_salina]]
 +
*** [[orthology-ectocarpus_siliculosus]]
 
* [[PGLUCISOM-RXN]]
 
* [[PGLUCISOM-RXN]]
 
** 2 associated gene(s):
 
** 2 associated gene(s):
Line 72: Line 72:
 
*** [[SJ08179]]
 
*** [[SJ08179]]
 
** 2 reconstruction source(s) associated:
 
** 2 reconstruction source(s) associated:
−
*** [[orthology-ectocarpus_siliculosus]]
 
 
*** [[annotation-saccharina_japonica_genome]]
 
*** [[annotation-saccharina_japonica_genome]]
 +
*** [[orthology-ectocarpus_siliculosus]]
 
* [[PYRUFLAVREDUCT-RXN]]
 
* [[PYRUFLAVREDUCT-RXN]]
 
** 3 associated gene(s):
 
** 3 associated gene(s):
−
*** [[SJ09312]]
 
 
*** [[SJ19470]]
 
*** [[SJ19470]]
 +
*** [[SJ09312]]
 
*** [[SJ15200]]
 
*** [[SJ15200]]
 
** 1 reconstruction source(s) associated:
 
** 1 reconstruction source(s) associated:
Line 86: Line 86:
 
*** [[SJ00485]]
 
*** [[SJ00485]]
 
** 2 reconstruction source(s) associated:
 
** 2 reconstruction source(s) associated:
 +
*** [[annotation-saccharina_japonica_genome]]
 
*** [[orthology-ectocarpus_siliculosus]]
 
*** [[orthology-ectocarpus_siliculosus]]
−
*** [[annotation-saccharina_japonica_genome]]
 
 
* [[RXN0-5224]]
 
* [[RXN0-5224]]
 
** 14 associated gene(s):
 
** 14 associated gene(s):
−
*** [[SJ18141]]
+
*** [[SJ07324]]
 
*** [[SJ21158]]
 
*** [[SJ21158]]
−
*** [[SJ07587]]
 
−
*** [[SJ18140]]
 
−
*** [[SJ12311]]
 
−
*** [[SJ13238]]
 
−
*** [[SJ22175]]
 
−
*** [[SJ18135]]
 
−
*** [[SJ07762]]
 
 
*** [[SJ17783]]
 
*** [[SJ17783]]
 +
*** [[SJ18140]]
 
*** [[SJ18142]]
 
*** [[SJ18142]]
 +
*** [[SJ18141]]
 
*** [[SJ07765]]
 
*** [[SJ07765]]
−
*** [[SJ07324]]
 
 
*** [[SJ13240]]
 
*** [[SJ13240]]
 +
*** [[SJ07587]]
 +
*** [[SJ22175]]
 +
*** [[SJ18135]]
 +
*** [[SJ13238]]
 +
*** [[SJ12311]]
 +
*** [[SJ07762]]
 
** 2 reconstruction source(s) associated:
 
** 2 reconstruction source(s) associated:
−
*** [[orthology-ectocarpus_siliculosus]]
 
 
*** [[annotation-saccharina_japonica_genome]]
 
*** [[annotation-saccharina_japonica_genome]]
 +
*** [[orthology-ectocarpus_siliculosus]]
 
* [[TRIOSEPISOMERIZATION-RXN]]
 
* [[TRIOSEPISOMERIZATION-RXN]]
 
** 5 associated gene(s):
 
** 5 associated gene(s):
 +
*** [[SJ10351]]
 +
*** [[SJ11011]]
 
*** [[SJ15388]]
 
*** [[SJ15388]]
 
*** [[SJ07665]]
 
*** [[SJ07665]]
−
*** [[SJ11011]]
 
 
*** [[SJ21027]]
 
*** [[SJ21027]]
−
*** [[SJ10351]]
 
 
** 4 reconstruction source(s) associated:
 
** 4 reconstruction source(s) associated:
 
*** [[orthology-arabidopsis_thaliana]]
 
*** [[orthology-arabidopsis_thaliana]]
−
*** [[orthology-ectocarpus_siliculosus]]
 
−
*** [[orthology-nannochloropsis_salina]]
 
 
*** [[annotation-saccharina_japonica_genome]]
 
*** [[annotation-saccharina_japonica_genome]]
 +
*** [[orthology-nannochloropsis_salina]]
 +
*** [[orthology-ectocarpus_siliculosus]]
 
== Reaction(s) not found ==
 
== Reaction(s) not found ==
 
* [http://metacyc.org/META/NEW-IMAGE?object=1.2.7.6-RXN 1.2.7.6-RXN]
 
* [http://metacyc.org/META/NEW-IMAGE?object=1.2.7.6-RXN 1.2.7.6-RXN]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=PEPSYNTH-RXN PEPSYNTH-RXN]
 
* [http://metacyc.org/META/NEW-IMAGE?object=PWY-7784 PWY-7784]
 
* [http://metacyc.org/META/NEW-IMAGE?object=PWY-7784 PWY-7784]
 
* [http://metacyc.org/META/NEW-IMAGE?object=PWY-7784 PWY-7784]
 
* [http://metacyc.org/META/NEW-IMAGE?object=PWY-7784 PWY-7784]
Line 129: Line 130:
 
{{#set: common name=carbohydrate biosynthesis (Methanobacterium thermoautotrophicum)}}
 
{{#set: common name=carbohydrate biosynthesis (Methanobacterium thermoautotrophicum)}}
 
{{#set: reaction found=10}}
 
{{#set: reaction found=10}}
−
{{#set: total reaction=14}}
+
{{#set: total reaction=15}}
−
{{#set: completion rate=71.0}}
+
{{#set: completion rate=67.0}}

Latest revision as of 11:31, 10 January 2019

Pathway PWY-6142

  • taxonomic range:
  • common name:
    • gluconeogenesis II (Methanobacterium thermoautotrophicum)
  • Synonym(s):
    • carbohydrate biosynthesis (Methanobacterium thermoautotrophicum)

Reaction(s) found

10 reactions found over 15 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/sjapgem/index.php?title=PWY-6142&oldid=15347"