Difference between revisions of "P185-PWY"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-47...")
 
 
Line 13: Line 13:
 
* [[1TRANSKETO-RXN]]
 
* [[1TRANSKETO-RXN]]
 
** 2 associated gene(s):
 
** 2 associated gene(s):
 +
*** [[SJ12529]]
 
*** [[SJ12026]]
 
*** [[SJ12026]]
−
*** [[SJ12529]]
 
 
** 3 reconstruction source(s) associated:
 
** 3 reconstruction source(s) associated:
 
*** [[orthology-arabidopsis_thaliana]]
 
*** [[orthology-arabidopsis_thaliana]]
 +
*** [[annotation-saccharina_japonica_genome]]
 
*** [[orthology-ectocarpus_siliculosus]]
 
*** [[orthology-ectocarpus_siliculosus]]
−
*** [[annotation-saccharina_japonica_genome]]
 
 
* [[2TRANSKETO-RXN]]
 
* [[2TRANSKETO-RXN]]
 
** 2 associated gene(s):
 
** 2 associated gene(s):
 +
*** [[SJ12026]]
 
*** [[SJ12529]]
 
*** [[SJ12529]]
−
*** [[SJ12026]]
 
 
** 4 reconstruction source(s) associated:
 
** 4 reconstruction source(s) associated:
 
*** [[orthology-arabidopsis_thaliana]]
 
*** [[orthology-arabidopsis_thaliana]]
−
*** [[orthology-ectocarpus_siliculosus]]
 
−
*** [[orthology-nannochloropsis_salina]]
 
 
*** [[annotation-saccharina_japonica_genome]]
 
*** [[annotation-saccharina_japonica_genome]]
 +
*** [[orthology-nannochloropsis_salina]]
 +
*** [[orthology-ectocarpus_siliculosus]]
 
* [[F16ALDOLASE-RXN]]
 
* [[F16ALDOLASE-RXN]]
 
** 5 associated gene(s):
 
** 5 associated gene(s):
−
*** [[SJ21513]]
 
 
*** [[SJ22520]]
 
*** [[SJ22520]]
 
*** [[SJ12479]]
 
*** [[SJ12479]]
−
*** [[SJ17964]]
 
 
*** [[SJ13560]]
 
*** [[SJ13560]]
 +
*** [[SJ17964]]
 +
*** [[SJ21513]]
 
** 3 reconstruction source(s) associated:
 
** 3 reconstruction source(s) associated:
−
*** [[orthology-ectocarpus_siliculosus]]
 
−
*** [[orthology-nannochloropsis_salina]]
 
 
*** [[annotation-saccharina_japonica_genome]]
 
*** [[annotation-saccharina_japonica_genome]]
 +
*** [[orthology-nannochloropsis_salina]]
 +
*** [[orthology-ectocarpus_siliculosus]]
 
* [[F16BDEPHOS-RXN]]
 
* [[F16BDEPHOS-RXN]]
 
** 7 associated gene(s):
 
** 7 associated gene(s):
 +
*** [[SJ14175]]
 +
*** [[SJ16950]]
 +
*** [[SJ17320]]
 +
*** [[SJ13518]]
 
*** [[SJ14821]]
 
*** [[SJ14821]]
 
*** [[SJ10463]]
 
*** [[SJ10463]]
−
*** [[SJ13518]]
 
−
*** [[SJ16950]]
 
−
*** [[SJ14175]]
 
 
*** [[SJ20807]]
 
*** [[SJ20807]]
−
*** [[SJ17320]]
 
 
** 4 reconstruction source(s) associated:
 
** 4 reconstruction source(s) associated:
 
*** [[orthology-arabidopsis_thaliana]]
 
*** [[orthology-arabidopsis_thaliana]]
−
*** [[orthology-ectocarpus_siliculosus]]
 
−
*** [[orthology-nannochloropsis_salina]]
 
 
*** [[annotation-saccharina_japonica_genome]]
 
*** [[annotation-saccharina_japonica_genome]]
 +
*** [[orthology-nannochloropsis_salina]]
 +
*** [[orthology-ectocarpus_siliculosus]]
 
* [[GAPOXNPHOSPHN-RXN]]
 
* [[GAPOXNPHOSPHN-RXN]]
 
** 5 associated gene(s):
 
** 5 associated gene(s):
 +
*** [[SJ05204]]
 +
*** [[SJ07665]]
 
*** [[SJ00348]]
 
*** [[SJ00348]]
 
*** [[SJ05251]]
 
*** [[SJ05251]]
−
*** [[SJ05204]]
 
 
*** [[SJ14154]]
 
*** [[SJ14154]]
−
*** [[SJ07665]]
 
 
** 4 reconstruction source(s) associated:
 
** 4 reconstruction source(s) associated:
 
*** [[orthology-arabidopsis_thaliana]]
 
*** [[orthology-arabidopsis_thaliana]]
−
*** [[orthology-ectocarpus_siliculosus]]
 
−
*** [[orthology-nannochloropsis_salina]]
 
 
*** [[annotation-saccharina_japonica_genome]]
 
*** [[annotation-saccharina_japonica_genome]]
 +
*** [[orthology-nannochloropsis_salina]]
 +
*** [[orthology-ectocarpus_siliculosus]]
 
* [[GLYCERONE-KINASE-RXN]]
 
* [[GLYCERONE-KINASE-RXN]]
 
** 1 associated gene(s):
 
** 1 associated gene(s):
 
*** [[SJ18789]]
 
*** [[SJ18789]]
 
** 3 reconstruction source(s) associated:
 
** 3 reconstruction source(s) associated:
−
*** [[orthology-ectocarpus_siliculosus]]
 
−
*** [[orthology-nannochloropsis_salina]]
 
 
*** [[annotation-saccharina_japonica_genome]]
 
*** [[annotation-saccharina_japonica_genome]]
 +
*** [[orthology-nannochloropsis_salina]]
 +
*** [[orthology-ectocarpus_siliculosus]]
 
* [[PHOSGLYPHOS-RXN]]
 
* [[PHOSGLYPHOS-RXN]]
 
** 6 associated gene(s):
 
** 6 associated gene(s):
−
*** [[SJ10780]]
 
−
*** [[SJ18020]]
 
−
*** [[SJ05024]]
 
 
*** [[SJ15992]]
 
*** [[SJ15992]]
−
*** [[SJ15971]]
+
*** [[SJ05024]]
 
*** [[SJ15991]]
 
*** [[SJ15991]]
 +
*** [[SJ18020]]
 +
*** [[SJ15971]]
 +
*** [[SJ10780]]
 
** 4 reconstruction source(s) associated:
 
** 4 reconstruction source(s) associated:
 
*** [[orthology-arabidopsis_thaliana]]
 
*** [[orthology-arabidopsis_thaliana]]
−
*** [[orthology-ectocarpus_siliculosus]]
 
−
*** [[orthology-nannochloropsis_salina]]
 
 
*** [[annotation-saccharina_japonica_genome]]
 
*** [[annotation-saccharina_japonica_genome]]
 +
*** [[orthology-nannochloropsis_salina]]
 +
*** [[orthology-ectocarpus_siliculosus]]
 
* [[RIB5PISOM-RXN]]
 
* [[RIB5PISOM-RXN]]
 
** 2 associated gene(s):
 
** 2 associated gene(s):
Line 91: Line 91:
 
** 3 reconstruction source(s) associated:
 
** 3 reconstruction source(s) associated:
 
*** [[orthology-arabidopsis_thaliana]]
 
*** [[orthology-arabidopsis_thaliana]]
−
*** [[orthology-ectocarpus_siliculosus]]
 
 
*** [[annotation-saccharina_japonica_genome]]
 
*** [[annotation-saccharina_japonica_genome]]
 +
*** [[orthology-ectocarpus_siliculosus]]
 
* [[RIBULP3EPIM-RXN]]
 
* [[RIBULP3EPIM-RXN]]
 
** 2 associated gene(s):
 
** 2 associated gene(s):
Line 99: Line 99:
 
** 4 reconstruction source(s) associated:
 
** 4 reconstruction source(s) associated:
 
*** [[orthology-arabidopsis_thaliana]]
 
*** [[orthology-arabidopsis_thaliana]]
 +
*** [[annotation-saccharina_japonica_genome]]
 +
*** [[orthology-nannochloropsis_salina]]
 
*** [[orthology-ectocarpus_siliculosus]]
 
*** [[orthology-ectocarpus_siliculosus]]
−
*** [[orthology-nannochloropsis_salina]]
 
−
*** [[annotation-saccharina_japonica_genome]]
 
 
* [[TRANSALDOL-RXN]]
 
* [[TRANSALDOL-RXN]]
 
** 2 associated gene(s):
 
** 2 associated gene(s):
Line 108: Line 108:
 
** 4 reconstruction source(s) associated:
 
** 4 reconstruction source(s) associated:
 
*** [[orthology-arabidopsis_thaliana]]
 
*** [[orthology-arabidopsis_thaliana]]
−
*** [[orthology-ectocarpus_siliculosus]]
 
−
*** [[orthology-nannochloropsis_salina]]
 
 
*** [[annotation-saccharina_japonica_genome]]
 
*** [[annotation-saccharina_japonica_genome]]
 +
*** [[orthology-nannochloropsis_salina]]
 +
*** [[orthology-ectocarpus_siliculosus]]
 
* [[TRIOSEPISOMERIZATION-RXN]]
 
* [[TRIOSEPISOMERIZATION-RXN]]
 
** 5 associated gene(s):
 
** 5 associated gene(s):
 +
*** [[SJ10351]]
 +
*** [[SJ11011]]
 
*** [[SJ15388]]
 
*** [[SJ15388]]
 
*** [[SJ07665]]
 
*** [[SJ07665]]
−
*** [[SJ11011]]
 
 
*** [[SJ21027]]
 
*** [[SJ21027]]
−
*** [[SJ10351]]
 
 
** 4 reconstruction source(s) associated:
 
** 4 reconstruction source(s) associated:
 
*** [[orthology-arabidopsis_thaliana]]
 
*** [[orthology-arabidopsis_thaliana]]
−
*** [[orthology-ectocarpus_siliculosus]]
 
−
*** [[orthology-nannochloropsis_salina]]
 
 
*** [[annotation-saccharina_japonica_genome]]
 
*** [[annotation-saccharina_japonica_genome]]
 +
*** [[orthology-nannochloropsis_salina]]
 +
*** [[orthology-ectocarpus_siliculosus]]
 
== Reaction(s) not found ==
 
== Reaction(s) not found ==
 
* [http://metacyc.org/META/NEW-IMAGE?object=FORMALDEHYDE-TRANSKETOLASE-RXN FORMALDEHYDE-TRANSKETOLASE-RXN]
 
* [http://metacyc.org/META/NEW-IMAGE?object=FORMALDEHYDE-TRANSKETOLASE-RXN FORMALDEHYDE-TRANSKETOLASE-RXN]

Latest revision as of 12:33, 10 January 2019

Pathway P185-PWY

  • taxonomic range:
  • common name:
    • formaldehyde assimilation III (dihydroxyacetone cycle)
  • Synonym(s):
    • dihydroxyacetone cycle
    • xylulose-monophosphate cycle

Reaction(s) found

11 reactions found over 12 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/sjapgem/index.php?title=P185-PWY&oldid=15432"