Difference between revisions of "BADH-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=BADH-RXN BADH-RXN] == * direction: ** REVERSIBLE * common name: ** betaine-aldehyde dehydrogenase *...")
 
 
Line 3: Line 3:
 
* direction:
 
* direction:
 
** REVERSIBLE
 
** REVERSIBLE
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/1.2.1.8 EC-1.2.1.8]
 
* common name:
 
* common name:
 
** betaine-aldehyde dehydrogenase
 
** betaine-aldehyde dehydrogenase
 
** betaine aldehyde dehydrogenase
 
** betaine aldehyde dehydrogenase
−
* ec number:
 
−
** [http://enzyme.expasy.org/EC/1.2.1.8 EC-1.2.1.8]
 
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[BETAINE_ALDEHYDE]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[BETAINE]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[NADH]][c]
+
** 1 [[BETAINE_ALDEHYDE]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''<=>''' 2 [[PROTON]][c] '''+''' 1 [[BETAINE]][c] '''+''' 1 [[NADH]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 betaine aldehyde[c] '''+''' 1 NAD+[c] '''+''' 1 H2O[c] '''<=>''' 1 glycine betaine[c] '''+''' 2 H+[c] '''+''' 1 NADH[c]
+
** 1 betaine aldehyde[c] '''+''' 1 NAD+[c] '''+''' 1 H2O[c] '''<=>''' 2 H+[c] '''+''' 1 glycine betaine[c] '''+''' 1 NADH[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[SJ09287]]
+
* Gene: [[SJ00435]]
−
** Source: [[annotation-saccharina_japonica_genome]]
+
−
*** Assignment: GO-TERM
+
−
* Gene: [[SJ11331]]
+
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 
* Gene: [[SJ11330]]
 
* Gene: [[SJ11330]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
−
* Gene: [[SJ00435]]
+
* Gene: [[SJ22552]]
 +
** Source: [[annotation-saccharina_japonica_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[SJ11331]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
** Source: [[orthology-ectocarpus_siliculosus]]
+
* Gene: [[SJ09287]]
 +
** Source: [[annotation-saccharina_japonica_genome]]
 +
*** Assignment: GO-TERM
 
* Gene: [[SJ06047]]
 
* Gene: [[SJ06047]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
Line 36: Line 39:
 
* Gene: [[SJ05897]]
 
* Gene: [[SJ05897]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-arabidopsis_thaliana]]
−
* Gene: [[SJ22552]]
 
−
** Source: [[annotation-saccharina_japonica_genome]]
 
−
*** Assignment: GO-TERM
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY1F-353]], glycine betaine biosynthesis III (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY1F-353 PWY1F-353]
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[CHOLINE-BETAINE-ANA-PWY]], choline degradation I: [http://metacyc.org/META/NEW-IMAGE?object=CHOLINE-BETAINE-ANA-PWY CHOLINE-BETAINE-ANA-PWY]
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
 
* [[PWY-3722]], glycine betaine biosynthesis II (Gram-positive bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-3722 PWY-3722]
 
* [[PWY-3722]], glycine betaine biosynthesis II (Gram-positive bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-3722 PWY-3722]
 
** '''1''' reactions found over '''2''' reactions in the full pathway
 
** '''1''' reactions found over '''2''' reactions in the full pathway
 
* [[BETSYN-PWY]], glycine betaine biosynthesis I (Gram-negative bacteria): [http://metacyc.org/META/NEW-IMAGE?object=BETSYN-PWY BETSYN-PWY]
 
* [[BETSYN-PWY]], glycine betaine biosynthesis I (Gram-negative bacteria): [http://metacyc.org/META/NEW-IMAGE?object=BETSYN-PWY BETSYN-PWY]
 
** '''2''' reactions found over '''2''' reactions in the full pathway
 
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY1F-353]], glycine betaine biosynthesis III (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY1F-353 PWY1F-353]
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 
* [[PWY-7494]], choline degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7494 PWY-7494]
 
* [[PWY-7494]], choline degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7494 PWY-7494]
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[CHOLINE-BETAINE-ANA-PWY]], choline degradation I: [http://metacyc.org/META/NEW-IMAGE?object=CHOLINE-BETAINE-ANA-PWY CHOLINE-BETAINE-ANA-PWY]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
Line 76: Line 76:
 
** [http://www.uniprot.org/uniprot/O22477 O22477]
 
** [http://www.uniprot.org/uniprot/O22477 O22477]
 
{{#set: direction=REVERSIBLE}}
 
{{#set: direction=REVERSIBLE}}
 +
{{#set: ec number=EC-1.2.1.8}}
 
{{#set: common name=betaine-aldehyde dehydrogenase}}
 
{{#set: common name=betaine-aldehyde dehydrogenase}}
 
{{#set: common name=betaine aldehyde dehydrogenase}}
 
{{#set: common name=betaine aldehyde dehydrogenase}}
−
{{#set: ec number=EC-1.2.1.8}}
+
{{#set: gene associated=SJ00435|SJ11330|SJ22552|SJ11331|SJ09287|SJ06047|SJ05897}}
−
{{#set: gene associated=SJ09287|SJ11331|SJ11330|SJ00435|SJ06047|SJ05897|SJ22552}}
+
{{#set: in pathway=PWY-3722|BETSYN-PWY|PWY1F-353|PWY-7494|CHOLINE-BETAINE-ANA-PWY}}
−
{{#set: in pathway=PWY1F-353|CHOLINE-BETAINE-ANA-PWY|PWY-3722|BETSYN-PWY|PWY-7494}}
+
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction source=orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus|annotation-saccharina_japonica_genome}}
+
{{#set: reconstruction source=orthology-arabidopsis_thaliana|annotation-saccharina_japonica_genome|orthology-ectocarpus_siliculosus}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 11:38, 10 January 2019

Reaction BADH-RXN

  • direction:
    • REVERSIBLE
  • ec number:
  • common name:
    • betaine-aldehyde dehydrogenase
    • betaine aldehyde dehydrogenase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 betaine aldehyde[c] + 1 NAD+[c] + 1 H2O[c] <=> 2 H+[c] + 1 glycine betaine[c] + 1 NADH[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-3722, glycine betaine biosynthesis II (Gram-positive bacteria): PWY-3722
    • 1 reactions found over 2 reactions in the full pathway
  • BETSYN-PWY, glycine betaine biosynthesis I (Gram-negative bacteria): BETSYN-PWY
    • 2 reactions found over 2 reactions in the full pathway
  • PWY1F-353, glycine betaine biosynthesis III (plants): PWY1F-353
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-7494, choline degradation IV: PWY-7494
    • 1 reactions found over 4 reactions in the full pathway
  • CHOLINE-BETAINE-ANA-PWY, choline degradation I: CHOLINE-BETAINE-ANA-PWY
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/sjapgem/index.php?title=BADH-RXN&oldid=15582"