Difference between revisions of "RXN1F-150"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-150 RXN1F-150] == * direction: ** LEFT-TO-RIGHT * common name: ** lycopene β-cyclase * e...")
 
 
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* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** lycopene β-cyclase
 
 
* ec number:
 
* ec number:
 
** [http://enzyme.expasy.org/EC/5.5.1.19 EC-5.5.1.19]
 
** [http://enzyme.expasy.org/EC/5.5.1.19 EC-5.5.1.19]
 +
* common name:
 +
** lycopene β-cyclase
 
* Synonym(s):
 
* Synonym(s):
  
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== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[SJ11349]]
+
* Gene: [[SJ11355]]
 +
** Source: [[orthology-arabidopsis_thaliana]]
 +
* Gene: [[SJ09087]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 
* Gene: [[SJ11348]]
 
* Gene: [[SJ11348]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-arabidopsis_thaliana]]
−
* Gene: [[SJ05110]]
+
* Gene: [[SJ11349]]
−
** Source: [[orthology-ectocarpus_siliculosus]]
+
−
* Gene: [[SJ11355]]
+
 
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 
* Gene: [[SJ05072]]
 
* Gene: [[SJ05072]]
 +
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
** Source: [[orthology-arabidopsis_thaliana]]
 
−
* Gene: [[SJ09087]]
 
−
** Source: [[orthology-arabidopsis_thaliana]]
 
 
* Gene: [[SJ04962]]
 
* Gene: [[SJ04962]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
** Source: [[orthology-ectocarpus_siliculosus]]
 
 
** Source: [[orthology-nannochloropsis_salina]]
 
** Source: [[orthology-nannochloropsis_salina]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[SJ05110]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-7938]], isorenieratene biosynthesis I (actinobacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7938 PWY-7938]
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 
* [[PWY-5943]], β-carotene biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5943 PWY-5943]
 
* [[PWY-5943]], β-carotene biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5943 PWY-5943]
 
** '''2''' reactions found over '''2''' reactions in the full pathway
 
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7939]], chlorobactene biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7939 PWY-7939]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 
* [[PWY-7591]], okenone biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7591 PWY-7591]
 
* [[PWY-7591]], okenone biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7591 PWY-7591]
 
** '''2''' reactions found over '''6''' reactions in the full pathway
 
** '''2''' reactions found over '''6''' reactions in the full pathway
Line 44: Line 48:
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-arabidopsis_thaliana]]
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-ectocarpus_siliculosus]]
 
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
** Source: [[orthology-nannochloropsis_salina]]
 
** Source: [[orthology-nannochloropsis_salina]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
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** [http://www.genome.jp/dbget-bin/www_bget?R05341 R05341]
 
** [http://www.genome.jp/dbget-bin/www_bget?R05341 R05341]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=lycopene β-cyclase}}
 
 
{{#set: ec number=EC-5.5.1.19}}
 
{{#set: ec number=EC-5.5.1.19}}
−
{{#set: gene associated=SJ11349|SJ11348|SJ05110|SJ11355|SJ05072|SJ09087|SJ04962}}
+
{{#set: common name=lycopene β-cyclase}}
−
{{#set: in pathway=PWY-5943|PWY-7591}}
+
{{#set: gene associated=SJ11355|SJ09087|SJ11348|SJ11349|SJ05072|SJ04962|SJ05110}}
 +
{{#set: in pathway=PWY-7938|PWY-5943|PWY-7939|PWY-7591}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction source=orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus|orthology-nannochloropsis_salina|annotation-saccharina_japonica_genome}}
 
{{#set: reconstruction source=orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus|orthology-nannochloropsis_salina|annotation-saccharina_japonica_genome}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 12:14, 10 January 2019

Reaction RXN1F-150

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • common name:
    • lycopene β-cyclase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 all-trans-lycopene[c] => 1 γ-carotene[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7938, isorenieratene biosynthesis I (actinobacteria): PWY-7938
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-5943, β-carotene biosynthesis: PWY-5943
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-7939, chlorobactene biosynthesis: PWY-7939
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7591, okenone biosynthesis: PWY-7591
    • 2 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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