Difference between revisions of "MALSYN-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=MALSYN-RXN MALSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** malate synthase * ec numb...")
 
 
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* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** malate synthase
 
 
* ec number:
 
* ec number:
 
** [http://enzyme.expasy.org/EC/2.3.3.9 EC-2.3.3.9]
 
** [http://enzyme.expasy.org/EC/2.3.3.9 EC-2.3.3.9]
 +
* common name:
 +
** malate synthase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ACETYL-COA]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[GLYOX]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[MAL]][c] '''+''' 1 [[CO-A]][c]
+
** 1 [[WATER]][c] '''+''' 1 [[ACETYL-COA]][c] '''+''' 1 [[GLYOX]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[MAL]][c] '''+''' 1 [[CO-A]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 acetyl-CoA[c] '''+''' 1 H2O[c] '''+''' 1 glyoxylate[c] '''=>''' 1 H+[c] '''+''' 1 (S)-malate[c] '''+''' 1 coenzyme A[c]
+
** 1 H2O[c] '''+''' 1 acetyl-CoA[c] '''+''' 1 glyoxylate[c] '''=>''' 1 H+[c] '''+''' 1 (S)-malate[c] '''+''' 1 coenzyme A[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
Line 20: Line 20:
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
** Source: [[orthology-ectocarpus_siliculosus]]
 
 
** Source: [[orthology-nannochloropsis_salina]]
 
** Source: [[orthology-nannochloropsis_salina]]
 
** Source: [[orthology-nannochloropsis_salina]]
 
** Source: [[orthology-nannochloropsis_salina]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7295]], L-arabinose degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7295 PWY-7295]
 
−
** '''2''' reactions found over '''8''' reactions in the full pathway
 
 
* [[PWY-7294]], xylose degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7294 PWY-7294]
 
* [[PWY-7294]], xylose degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7294 PWY-7294]
 
** '''1''' reactions found over '''7''' reactions in the full pathway
 
** '''1''' reactions found over '''7''' reactions in the full pathway
 
* [[GLYOXDEG-PWY]], glycolate and glyoxylate degradation II: [http://metacyc.org/META/NEW-IMAGE?object=GLYOXDEG-PWY GLYOXDEG-PWY]
 
* [[GLYOXDEG-PWY]], glycolate and glyoxylate degradation II: [http://metacyc.org/META/NEW-IMAGE?object=GLYOXDEG-PWY GLYOXDEG-PWY]
 
** '''2''' reactions found over '''2''' reactions in the full pathway
 
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7295]], L-arabinose degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7295 PWY-7295]
 +
** '''1''' reactions found over '''8''' reactions in the full pathway
 
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY]
 
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY]
 
** '''10''' reactions found over '''11''' reactions in the full pathway
 
** '''10''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-7854]], crotonyl-CoA/ethylmalonyl-CoA/hydroxybutyryl-CoA cycle (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7854 PWY-7854]
 +
** '''1''' reactions found over '''14''' reactions in the full pathway
 
* [[GLYOXYLATE-BYPASS]], glyoxylate cycle: [http://metacyc.org/META/NEW-IMAGE?object=GLYOXYLATE-BYPASS GLYOXYLATE-BYPASS]
 
* [[GLYOXYLATE-BYPASS]], glyoxylate cycle: [http://metacyc.org/META/NEW-IMAGE?object=GLYOXYLATE-BYPASS GLYOXYLATE-BYPASS]
 
** '''6''' reactions found over '''6''' reactions in the full pathway
 
** '''6''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969]
 
−
** '''10''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728]
 
−
** '''11''' reactions found over '''18''' reactions in the full pathway
 
 
* [[PWY-7118]], chitin degradation to ethanol: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7118 PWY-7118]
 
* [[PWY-7118]], chitin degradation to ethanol: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7118 PWY-7118]
 
** '''5''' reactions found over '''6''' reactions in the full pathway
 
** '''5''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969]
 +
** '''10''' reactions found over '''12''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-arabidopsis_thaliana]]
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-ectocarpus_siliculosus]]
 
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
** Source: [[orthology-nannochloropsis_salina]]
 
** Source: [[orthology-nannochloropsis_salina]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
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== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18181 18181]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18182 18182]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00472 R00472]
 
* PIR:
 
* PIR:
 
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40715 I40715]
 
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40715 I40715]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07690 T07690]
 
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07690 T07690]
 
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T44752 T44752]
 
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T44752 T44752]
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00472 R00472]
 
 
* UNIPROT:
 
* UNIPROT:
 
** [http://www.uniprot.org/uniprot/P42450 P42450]
 
** [http://www.uniprot.org/uniprot/P42450 P42450]
Line 96: Line 96:
 
** [http://www.uniprot.org/uniprot/O32913 O32913]
 
** [http://www.uniprot.org/uniprot/O32913 O32913]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=malate synthase}}
 
 
{{#set: ec number=EC-2.3.3.9}}
 
{{#set: ec number=EC-2.3.3.9}}
 +
{{#set: common name=malate synthase}}
 
{{#set: gene associated=SJ14150}}
 
{{#set: gene associated=SJ14150}}
−
{{#set: in pathway=PWY-7295|PWY-7294|GLYOXDEG-PWY|P105-PWY|GLYOXYLATE-BYPASS|PWY-6969|PWY-6728|PWY-7118}}
+
{{#set: in pathway=PWY-7294|GLYOXDEG-PWY|PWY-7295|P105-PWY|PWY-7854|GLYOXYLATE-BYPASS|PWY-7118|PWY-6969}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction source=orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus|orthology-nannochloropsis_salina|annotation-saccharina_japonica_genome}}
 
{{#set: reconstruction source=orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus|orthology-nannochloropsis_salina|annotation-saccharina_japonica_genome}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 13:19, 10 January 2019

Reaction MALSYN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • common name:
    • malate synthase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H2O[c] + 1 acetyl-CoA[c] + 1 glyoxylate[c] => 1 H+[c] + 1 (S)-malate[c] + 1 coenzyme A[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7294, xylose degradation IV: PWY-7294
    • 1 reactions found over 7 reactions in the full pathway
  • GLYOXDEG-PWY, glycolate and glyoxylate degradation II: GLYOXDEG-PWY
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-7295, L-arabinose degradation IV: PWY-7295
    • 1 reactions found over 8 reactions in the full pathway
  • P105-PWY, TCA cycle IV (2-oxoglutarate decarboxylase): P105-PWY
    • 10 reactions found over 11 reactions in the full pathway
  • PWY-7854, crotonyl-CoA/ethylmalonyl-CoA/hydroxybutyryl-CoA cycle (engineered): PWY-7854
    • 1 reactions found over 14 reactions in the full pathway
  • GLYOXYLATE-BYPASS, glyoxylate cycle: GLYOXYLATE-BYPASS
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-7118, chitin degradation to ethanol: PWY-7118
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-6969, TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): PWY-6969
    • 10 reactions found over 12 reactions in the full pathway

Reconstruction information

External links





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