Difference between revisions of "GCVP-RXN"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GCVP-RXN GCVP-RXN] == * direction: ** REVERSIBLE * common name: ** glycine decarboxylase * ec numbe...") |
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| Line 3: | Line 3: | ||
* direction: | * direction: | ||
** REVERSIBLE | ** REVERSIBLE | ||
| − | |||
| − | |||
* ec number: | * ec number: | ||
** [http://enzyme.expasy.org/EC/1.4.4.2 EC-1.4.4.2] | ** [http://enzyme.expasy.org/EC/1.4.4.2 EC-1.4.4.2] | ||
| + | * common name: | ||
| + | ** glycine decarboxylase | ||
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
| − | ** 1 [[ | + | ** 1 [[GLY]][c] '''+''' 1 [[PROTEIN-LIPOYLLYSINE]][c] '''+''' 1 [[PROTON]][c] '''<=>''' 1 [[AMINOMETHYLDIHYDROLIPOYL-GCVH]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] |
* With common name(s): | * With common name(s): | ||
| − | ** 1 | + | ** 1 glycine[c] '''+''' 1 a [glycine-cleavage complex H protein] N6-lipoyl-L-lysine[c] '''+''' 1 H+[c] '''<=>''' 1 a [glycine-cleavage complex H protein] N6-aminomethyldihydrolipoyl-L-lysine[c] '''+''' 1 CO2[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
| + | * Gene: [[SJ08557]] | ||
| + | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
* Gene: [[SJ06358]] | * Gene: [[SJ06358]] | ||
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
| − | |||
| − | |||
** Source: [[orthology-ectocarpus_siliculosus]] | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
== Pathways == | == Pathways == | ||
| Line 36: | Line 36: | ||
*** Tool: [[pathwaytools]] | *** Tool: [[pathwaytools]] | ||
== External links == | == External links == | ||
| + | * RHEA: | ||
| + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24307 24307] | ||
* LIGAND-RXN: | * LIGAND-RXN: | ||
** [http://www.genome.jp/dbget-bin/www_bget?R03425 R03425] | ** [http://www.genome.jp/dbget-bin/www_bget?R03425 R03425] | ||
| Line 50: | Line 52: | ||
** [http://www.uniprot.org/uniprot/O22575 O22575] | ** [http://www.uniprot.org/uniprot/O22575 O22575] | ||
{{#set: direction=REVERSIBLE}} | {{#set: direction=REVERSIBLE}} | ||
| − | |||
{{#set: ec number=EC-1.4.4.2}} | {{#set: ec number=EC-1.4.4.2}} | ||
| − | {{#set: gene associated= | + | {{#set: common name=glycine decarboxylase}} |
| + | {{#set: gene associated=SJ08557|SJ06358}} | ||
{{#set: in pathway=GLYCINE-SYN2-PWY|GLYCLEAV-PWY}} | {{#set: in pathway=GLYCINE-SYN2-PWY|GLYCLEAV-PWY}} | ||
{{#set: reconstruction category=orthology|annotation}} | {{#set: reconstruction category=orthology|annotation}} | ||
| − | {{#set: reconstruction source= | + | {{#set: reconstruction source=annotation-saccharina_japonica_genome|orthology-ectocarpus_siliculosus}} |
{{#set: reconstruction tool=pantograph|pathwaytools}} | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
Latest revision as of 13:10, 10 January 2019
Contents
Reaction GCVP-RXN
- direction:
- REVERSIBLE
- ec number:
- common name:
- glycine decarboxylase
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 GLY[c] + 1 PROTEIN-LIPOYLLYSINE[c] + 1 PROTON[c] <=> 1 AMINOMETHYLDIHYDROLIPOYL-GCVH[c] + 1 CARBON-DIOXIDE[c]
- With common name(s):
- 1 glycine[c] + 1 a [glycine-cleavage complex H protein] N6-lipoyl-L-lysine[c] + 1 H+[c] <=> 1 a [glycine-cleavage complex H protein] N6-aminomethyldihydrolipoyl-L-lysine[c] + 1 CO2[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: SJ08557
- Source: orthology-ectocarpus_siliculosus
- Gene: SJ06358
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
Pathways
- GLYCINE-SYN2-PWY, glycine biosynthesis II: GLYCINE-SYN2-PWY
- 2 reactions found over 3 reactions in the full pathway
- GLYCLEAV-PWY, glycine cleavage: GLYCLEAV-PWY
- 3 reactions found over 3 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-ectocarpus_siliculosus
- Tool: pantograph
- Source: orthology-ectocarpus_siliculosus
- Category: annotation
- Source: annotation-saccharina_japonica_genome
- Tool: pathwaytools
- Source: annotation-saccharina_japonica_genome
External links
- RHEA:
- LIGAND-RXN:
- UNIPROT:
