Difference between revisions of "DCMP-DEAMINASE-RXN"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DCMP-DEAMINASE-RXN DCMP-DEAMINASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** dCMP deam...") |
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| Line 3: | Line 3: | ||
* direction: | * direction: | ||
** LEFT-TO-RIGHT | ** LEFT-TO-RIGHT | ||
| − | |||
| − | |||
* ec number: | * ec number: | ||
** [http://enzyme.expasy.org/EC/3.5.4.12 EC-3.5.4.12] | ** [http://enzyme.expasy.org/EC/3.5.4.12 EC-3.5.4.12] | ||
| + | * common name: | ||
| + | ** dCMP deaminase | ||
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
| − | ** 1 [[PROTON]][c] '''+''' 1 [[DCMP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[ | + | ** 1 [[PROTON]][c] '''+''' 1 [[DCMP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[DUMP]][c] |
* With common name(s): | * With common name(s): | ||
| − | ** 1 H+[c] '''+''' 1 dCMP[c] '''+''' 1 H2O[c] '''=>''' 1 | + | ** 1 H+[c] '''+''' 1 dCMP[c] '''+''' 1 H2O[c] '''=>''' 1 ammonium[c] '''+''' 1 dUMP[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
| Line 20: | Line 20: | ||
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
| − | |||
** Source: [[orthology-arabidopsis_thaliana]] | ** Source: [[orthology-arabidopsis_thaliana]] | ||
| + | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
== Pathways == | == Pathways == | ||
* [[PWY-7210]], pyrimidine deoxyribonucleotides biosynthesis from CTP: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7210 PWY-7210] | * [[PWY-7210]], pyrimidine deoxyribonucleotides biosynthesis from CTP: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7210 PWY-7210] | ||
| Line 36: | Line 36: | ||
== External links == | == External links == | ||
* RHEA: | * RHEA: | ||
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22925 22925] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
** [http://www.genome.jp/dbget-bin/www_bget?R01663 R01663] | ** [http://www.genome.jp/dbget-bin/www_bget?R01663 R01663] | ||
| Line 46: | Line 46: | ||
** [http://www.uniprot.org/uniprot/O74069 O74069] | ** [http://www.uniprot.org/uniprot/O74069 O74069] | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
| − | |||
{{#set: ec number=EC-3.5.4.12}} | {{#set: ec number=EC-3.5.4.12}} | ||
| + | {{#set: common name=dCMP deaminase}} | ||
{{#set: gene associated=SJ20035}} | {{#set: gene associated=SJ20035}} | ||
{{#set: in pathway=PWY-7210}} | {{#set: in pathway=PWY-7210}} | ||
{{#set: reconstruction category=orthology|annotation}} | {{#set: reconstruction category=orthology|annotation}} | ||
| − | {{#set: reconstruction source=orthology-arabidopsis_thaliana | + | {{#set: reconstruction source=orthology-arabidopsis_thaliana|annotation-saccharina_japonica_genome|orthology-ectocarpus_siliculosus}} |
{{#set: reconstruction tool=pantograph|pathwaytools}} | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
Latest revision as of 14:25, 10 January 2019
Contents
Reaction DCMP-DEAMINASE-RXN
- direction:
- LEFT-TO-RIGHT
- ec number:
- common name:
- dCMP deaminase
- Synonym(s):
Reaction Formula
- With identifiers:
- With common name(s):
- 1 H+[c] + 1 dCMP[c] + 1 H2O[c] => 1 ammonium[c] + 1 dUMP[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: SJ20035
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: orthology-arabidopsis_thaliana
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
Pathways
- PWY-7210, pyrimidine deoxyribonucleotides biosynthesis from CTP: PWY-7210
- 8 reactions found over 8 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-arabidopsis_thaliana
- Tool: pantograph
- Source: orthology-ectocarpus_siliculosus
- Tool: pantograph
- Source: orthology-arabidopsis_thaliana
- Category: annotation
- Source: annotation-saccharina_japonica_genome
- Tool: pathwaytools
- Source: annotation-saccharina_japonica_genome
External links
